{
    "type": "genome",
    "identifier": "GCA_020061375.1",
    "organism": "Desulfarculales bacterium",
    "title": "Desulfarculales bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Northwestern University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020061375.1",
        "bioproject": "PRJNA563685",
        "biosample": "SAMN18076556",
        "wgs_master": "JAGUYJ000000000.1",
        "refseq_category": "na",
        "taxid": "2478484",
        "species_taxid": "2478484",
        "organism_name": "Desulfarculales bacterium",
        "infraspecific_name": "",
        "isolate": "DeMMO6_79",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/20",
        "asm_name": "ASM2006137v1",
        "submitter": "Northwestern University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/061/375/GCA_020061375.1_ASM2006137v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-20",
    "dateModified": "2021-09-20",
    "datePublished": "2021-09-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfarculales bacterium"
        ],
        "sample_taxid": [
            "2478484"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Sanford Underground Research Facility, Lead SD, Deep Mine Microbial Observatory (DeMMO)"
        ],
        "sample_host_location_id": [],
        "data_size": "0.489 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 70.31,
        "contamination": 2.27,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1768157",
        "Number of Sequences": "411",
        "Longest Sequences (bp)": "15220",
        "N50 (bp)": "4383",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.5",
        "Number of CDSs": "1305",
        "Average Protein Length": "296.5",
        "Coding Ratio (%)": "65.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "22",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Desulfarculus baarsii",
                "strain": "strain=DSM 2075",
                "accession": "GCA_000143965.1",
                "taxid": 453230,
                "species_taxid": 453230,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7564,
                "matched_fragments": 185,
                "total_fragments": 390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dethiosulfatarculus sandiegensis",
                "strain": "strain=SPR",
                "accession": "GCA_000931935.2",
                "taxid": 1429043,
                "species_taxid": 1429043,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9455,
                "matched_fragments": 63,
                "total_fragments": 390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalbus denitrificans",
                "strain": "strain=DSM 26407",
                "accession": "GCA_003337735.1",
                "taxid": 547122,
                "species_taxid": 547122,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5925,
                "matched_fragments": 51,
                "total_fragments": 390,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 70.31,
            "contamination": 2.27,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016218705.1",
                "gtdb_species": "s__JACRDC01 sp016218705",
                "ani": 83.0679,
                "matched_fragments": 273,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfarculia;o__Desulfarculales;f__Desulfarculaceae;g__JACRDC01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016208115.1",
                "gtdb_species": "s__JACRDC01 sp016208115",
                "ani": 82.9589,
                "matched_fragments": 262,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfarculia;o__Desulfarculales;f__Desulfarculaceae;g__JACRDC01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018819925.1",
                "gtdb_species": "s__SURF-10 sp018819925",
                "ani": 80.6123,
                "matched_fragments": 206,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfarculia;o__Desulfarculales;f__Desulfarculaceae;g__SURF-10",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.83",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_018902755.1",
                "gtdb_species": "s__SURF-10 sp018902755",
                "ani": 80.4457,
                "matched_fragments": 231,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfarculia;o__Desulfarculales;f__Desulfarculaceae;g__SURF-10",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_018896025.1",
                "gtdb_species": "s__SURF-10 sp018896025",
                "ani": 80.3332,
                "matched_fragments": 219,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfarculia;o__Desulfarculales;f__Desulfarculaceae;g__SURF-10",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.58",
                "min_intra_species_ani": "98.82",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 32.333,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 4651186.2,
        "gc_content": 61.635,
        "coding_genes": 3241.667,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfarculia",
        "o__Desulfarculales",
        "f__Desulfarculaceae",
        "g__JACRDC01",
        "s__"
    ],
    "_genome_taxon": [
        "Desulfarculales",
        "bacterium",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfarculia",
        "o__Desulfarculales",
        "f__Desulfarculaceae",
        "g__JACRDC01",
        "s__",
        "Bacteria",
        "Desulfobacterota",
        "Desulfarculia",
        "Desulfarculales",
        "Desulfarculaceae",
        "JACRDC01",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000731",
            "label": "drain water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}