{ "type": "genome", "identifier": "GCA_020061895.1", "organism": "Sphingopyxis sp.", "title": "Sphingopyxis sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Northwestern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020061895.1", "bioproject": "PRJNA563685", "biosample": "SAMN18076530", "wgs_master": "JAGUXJ000000000.1", "refseq_category": "na", "taxid": "1908224", "species_taxid": "1908224", "organism_name": "Sphingopyxis sp.", "infraspecific_name": "", "isolate": "DeMMO4_8", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2006189v1", "submitter": "Northwestern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/061/895/GCA_020061895.1_ASM2006189v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingopyxis sp." ], "sample_taxid": [ "1908224" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Sanford Underground Research Facility, Lead SD, Deep Mine Microbial Observatory (DeMMO)" ], "sample_host_location_id": [], "data_size": "0.871 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.1, "contamination": 4.88, "strain_heterogeneity": 81.82, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3144533", "Number of Sequences": "430", "Longest Sequences (bp)": "57886", "N50 (bp)": "8938", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.7", "Number of CDSs": "2662", "Average Protein Length": "300.6", "Coding Ratio (%)": "76.4", "Number of rRNAs": "1", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingopyxis terrae subsp. terrae", "strain": "strain=203-1", "accession": "GCA_001610975.1", "taxid": 2448440, "species_taxid": 33052, "relation_to_type": "type", "validated": true, "ani": 96.2332, "matched_fragments": 652, "total_fragments": 834, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingopyxis terrae subsp. ummariensis", "strain": "strain=DSM 24316", "accession": "GCA_002374275.1", "taxid": 429001, "species_taxid": 33052, "relation_to_type": "type", "validated": true, "ani": 95.9586, "matched_fragments": 612, "total_fragments": 834, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingopyxis terrae 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