{ "type": "genome", "identifier": "GCA_020062665.1", "organism": "Pseudomonadales bacterium", "title": "Pseudomonadales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Northwestern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020062665.1", "bioproject": "PRJNA563685", "biosample": "SAMN18076491", "wgs_master": "JAGUVW000000000.1", "refseq_category": "na", "taxid": "1891229", "species_taxid": "1891229", "organism_name": "Pseudomonadales bacterium", "infraspecific_name": "", "isolate": "DeMMO5_2", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2006266v1", "submitter": "Northwestern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/062/665/GCA_020062665.1_ASM2006266v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadales bacterium" ], "sample_taxid": [ "1891229" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Sanford Underground Research Facility, Lead SD, Deep Mine Microbial Observatory (DeMMO)" ], "sample_host_location_id": [], "data_size": "1.627 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5779219", "Number of Sequences": "92", "Longest Sequences (bp)": "321126", "N50 (bp)": "113146", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.4", "Number of CDSs": "4954", "Average Protein Length": "346.8", "Coding Ratio (%)": "89.2", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ketobacter alkanivorans", "strain": "strain=GI5", "accession": "GCA_002863865.1", "taxid": 1917421, "species_taxid": 1917421, "relation_to_type": "type", "validated": true, "ani": 77.1495, "matched_fragments": 257, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax gelatiniphagus", "strain": "strain=MEBiC 08158", "accession": "GCA_005938655.1", "taxid": 1194167, "species_taxid": 1194167, "relation_to_type": "type", "validated": true, "ani": 76.9613, "matched_fragments": 212, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flexibilis", "strain": "strain=ATCC 29606", "accession": "GCA_900155995.1", "taxid": 706570, "species_taxid": 706570, "relation_to_type": "type", "validated": true, "ani": 76.9536, "matched_fragments": 194, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flexibilis", "strain": "strain=ATCC 29606", "accession": "GCA_000802425.1", "taxid": 706570, "species_taxid": 706570, "relation_to_type": "type", "validated": true, "ani": 76.9436, "matched_fragments": 196, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundimaris", "strain": "strain=ST75FaO-1", "accession": "GCA_015265435.1", "taxid": 2735259, "species_taxid": 2735259, "relation_to_type": "type", "validated": true, "ani": 76.8371, "matched_fragments": 223, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax balearicus", "strain": "strain=MACL04", "accession": "GCA_025532145.1", "taxid": 413232, "species_taxid": 413232, "relation_to_type": "type", "validated": true, "ani": 76.7724, "matched_fragments": 161, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax mobilis", "strain": "strain=MT13131", "accession": "GCA_002864685.1", "taxid": 2019569, "species_taxid": 2019569, "relation_to_type": "type", "validated": true, "ani": 76.6973, "matched_fragments": 184, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fluviicoccus keumensis", "strain": "strain=DSM 105135", "accession": "GCA_004217445.1", "taxid": 1435465, "species_taxid": 1435465, "relation_to_type": "type", "validated": true, "ani": 76.6494, "matched_fragments": 151, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas aestusnigri", "strain": "strain=VGXO14", "accession": "GCA_002197985.1", "taxid": 857252, "species_taxid": 857252, "relation_to_type": "type", "validated": true, "ani": 76.6158, "matched_fragments": 117, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=DSM 50332", "accession": "GCA_004745455.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 76.5741, "matched_fragments": 234, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=LMG 18378", "accession": "GCA_900112375.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 76.5732, "matched_fragments": 238, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=NBRC 103043", "accession": "GCA_002091555.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 76.5628, "matched_fragments": 236, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas azotifigens", "strain": "strain=DSM 17556", "accession": "GCA_000425625.1", "taxid": 291995, "species_taxid": 291995, "relation_to_type": "type", "validated": true, "ani": 76.5539, "matched_fragments": 183, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guryensis", "strain": "strain=SR9", "accession": "GCA_014164785.1", "taxid": 2759165, "species_taxid": 2759165, "relation_to_type": "type", "validated": true, "ani": 76.5355, "matched_fragments": 165, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer mangrovi", "strain": "strain=DD-13", "accession": "GCA_002009015.1", "taxid": 927787, "species_taxid": 927787, "relation_to_type": "type", "validated": true, "ani": 76.5308, "matched_fragments": 88, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas stutzeri", "strain": "strain=FDAARGOS_875", "accession": "GCA_016028655.1", "taxid": 316, "species_taxid": 316, "relation_to_type": "type", "validated": true, "ani": 76.4396, "matched_fragments": 165, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer hydrolyticus", "strain": "strain=IRE-31", "accession": "GCA_009931115.1", "taxid": 48074, "species_taxid": 48074, "relation_to_type": "type", "validated": true, "ani": 76.4252, "matched_fragments": 90, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter mangrovi", "strain": "strain=CHFG3-1-5", "accession": "GCA_016798325.1", "taxid": 2803918, "species_taxid": 2803918, "relation_to_type": "type", "validated": true, "ani": 76.402, "matched_fragments": 140, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 76.4009, "matched_fragments": 201, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas stutzeri", "strain": "strain=CGMCC 1.1803", "accession": "GCA_000219605.1", "taxid": 316, "species_taxid": 316, "relation_to_type": "type", "validated": true, "ani": 76.3887, "matched_fragments": 167, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer donghaiensis", "strain": "strain=CGMCC 1.7063", "accession": "GCA_900129095.1", "taxid": 494016, "species_taxid": 494016, "relation_to_type": "type", "validated": true, "ani": 76.3766, "matched_fragments": 123, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halodurans", "strain": "strain=YJ-S3-2", "accession": "GCA_004327985.1", "taxid": 2528979, "species_taxid": 2528979, "relation_to_type": "type", "validated": true, "ani": 76.3468, "matched_fragments": 141, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter nauticus", "strain": "strain=DSM 50418", "accession": "GCA_003634635.1", "taxid": 2743, "species_taxid": 2743, "relation_to_type": "type", "validated": true, "ani": 76.3428, "matched_fragments": 108, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_024397575.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 76.2601, "matched_fragments": 130, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium alkalitolerans", "strain": "strain=AK62", "accession": "GCA_017776525.1", "taxid": 1542925, "species_taxid": 1542925, "relation_to_type": "type", "validated": true, "ani": 76.1994, "matched_fragments": 83, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_022548835.1", "taxid": 1495066, "species_taxid": 1495066, "relation_to_type": "type", "validated": true, "ani": 76.1956, "matched_fragments": 142, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas chloritidismutans", "strain": "strain=AW-1", "accession": "GCA_000495915.1", "taxid": 203192, "species_taxid": 203192, "relation_to_type": "type", "validated": true, "ani": 76.1442, "matched_fragments": 133, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 76.0849, "matched_fragments": 137, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter nitratireducens", "strain": "strain=AK21", "accession": "GCA_000708045.1", "taxid": 1137280, "species_taxid": 1137280, "relation_to_type": "type", "validated": true, "ani": 76.0641, "matched_fragments": 75, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella telluris", "strain": "strain=G9", "accession": "GCA_014297575.1", "taxid": 2763498, "species_taxid": 2763498, "relation_to_type": "type", "validated": true, "ani": 75.81, "matched_fragments": 92, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronocella acetinitrilica", "strain": "strain=ANL 6-2", "accession": "GCA_024170285.1", "taxid": 414046, "species_taxid": 414046, "relation_to_type": "type", "validated": true, "ani": 75.6628, "matched_fragments": 55, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylonatrum kenyense", "strain": "strain=AMT 1", "accession": "GCA_023195885.1", "taxid": 455253, "species_taxid": 455253, "relation_to_type": "type", "validated": true, "ani": 75.6539, "matched_fragments": 60, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halioglobus japonicus", "strain": "strain=S1-36", "accession": "GCA_002869505.1", "taxid": 930805, "species_taxid": 930805, "relation_to_type": "type", "validated": true, "ani": 75.6459, "matched_fragments": 59, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halioglobus japonicus", "strain": "strain=NBRC 107739", "accession": "GCA_001983995.1", "taxid": 930805, "species_taxid": 930805, "relation_to_type": "type", "validated": true, "ani": 75.6455, "matched_fragments": 59, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013178375.1", "gtdb_species": "s__Ch67 sp013178375", "ani": 81.1012, "matched_fragments": 1053, "total_fragments": 1877, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Ketobacteraceae;g__Ch67", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003671495.1", "gtdb_species": "s__Ketobacter sp003671495", "ani": 77.6185, "matched_fragments": 470, "total_fragments": 1877, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Ketobacteraceae;g__Ketobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002701845.1", "gtdb_species": "s__Ketobacter sp002701845", "ani": 77.352, "matched_fragments": 379, "total_fragments": 1877, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Ketobacteraceae;g__Ketobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002708905.1", "gtdb_species": "s__Ketobacter sp002708905", "ani": 77.2438, "matched_fragments": 329, "total_fragments": 1877, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Ketobacteraceae;g__Ketobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002471665.1", "gtdb_species": "s__Ketobacter sp002471665", "ani": 77.0876, "matched_fragments": 336, "total_fragments": 1877, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Ketobacteraceae;g__Ketobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.82", "min_intra_species_ani": "99.43", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_000802425.1", "gtdb_species": "s__Pseudomonas_H flexibilis", "ani": 76.9305, "matched_fragments": 197, "total_fragments": 1877, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_H", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "98.74", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_004217445.1", "gtdb_species": "s__Fluviicoccus keumensis", "ani": 76.6494, "matched_fragments": 151, "total_fragments": 1877, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Fluviicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900112375.1", "gtdb_species": "s__Pseudomonas citronellolis", "ani": 76.5906, "matched_fragments": 236, "total_fragments": 1877, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.078, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.08", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 26, "status": "-" }, { "accession": "GCF_013367775.1", "gtdb_species": "s__Microbulbifer sp013367775", "ani": 76.5624, "matched_fragments": 111, "total_fragments": 1877, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017491605.1", "gtdb_species": "s__Pseudomonas sp017491605", "ani": 76.4815, "matched_fragments": 225, "total_fragments": 1877, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009363155.1", "gtdb_species": "s__Azotobacter salinestris", "ani": 76.4615, "matched_fragments": 157, "total_fragments": 1877, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Azotobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003250495.1", "gtdb_species": "s__Marinobacterium sp003250495", "ani": 76.4577, "matched_fragments": 91, "total_fragments": 1877, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Marinobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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