{ "type": "genome", "identifier": "GCA_020062845.1", "organism": "Alphaproteobacteria bacterium", "title": "Alphaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Northwestern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020062845.1", "bioproject": "PRJNA563685", "biosample": "SAMN18076483", "wgs_master": "JAGUVO000000000.1", "refseq_category": "na", "taxid": "1913988", "species_taxid": "1913988", "organism_name": "Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "DeMMO5_47", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2006284v1", "submitter": "Northwestern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/062/845/GCA_020062845.1_ASM2006284v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Alphaproteobacteria bacterium" ], "sample_taxid": [ "1913988" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Sanford Underground Research Facility, Lead SD, Deep Mine Microbial Observatory (DeMMO)" ], "sample_host_location_id": [], "data_size": "0.955 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 32.34, "contamination": 5.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3396211", "Number of Sequences": "731", "Longest Sequences (bp)": "51876", "N50 (bp)": "5184", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.6", "Number of CDSs": "2818", "Average Protein Length": "279.5", "Coding Ratio (%)": "69.6", "Number of rRNAs": "1", "Number of tRNAs": "53", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Reyranella aquatilis", "strain": "strain=KCTC 52223", "accession": "GCA_020880995.1", "taxid": 2035356, "species_taxid": 2035356, "relation_to_type": "type", "validated": true, "ani": 82.7704, "matched_fragments": 291, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella massiliensis", "strain": "strain=521", "accession": "GCA_000312425.1", "taxid": 445220, "species_taxid": 445220, "relation_to_type": "type", "validated": true, "ani": 81.9896, "matched_fragments": 270, "total_fragments": 709, "ani_threshold": 95, "status": 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"strain=DSM 21787", "accession": "GCA_000474945.1", "taxid": 413479, "species_taxid": 413479, "relation_to_type": "type", "validated": true, "ani": 78.6055, "matched_fragments": 71, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas flava", "strain": "strain=DSM 18980", "accession": "GCA_000426685.1", "taxid": 415849, "species_taxid": 415849, "relation_to_type": "type", "validated": true, "ani": 78.5631, "matched_fragments": 75, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas marina", "strain": "strain=C16B3", "accession": "GCA_012241385.1", "taxid": 2714601, "species_taxid": 2714601, "relation_to_type": "type", "validated": true, "ani": 78.2728, "matched_fragments": 52, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, 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