{ "type": "genome", "identifier": "GCA_020093115.1", "organism": "Methylobacterium sp.", "title": "Methylobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Jet Propulsion Laboratory, California Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020093115.1", "bioproject": "PRJNA438545", "biosample": "SAMN15778330", "wgs_master": "JAITYG000000000.1", "refseq_category": "na", "taxid": "409", "species_taxid": "409", "organism_name": "Methylobacterium sp.", "infraspecific_name": "", "isolate": "MAG-2F-S7P-1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/22", "asm_name": "ASM2009311v1", "submitter": "Jet Propulsion Laboratory, California Institute of Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/093/115/GCA_020093115.1_ASM2009311v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-22", "dateModified": "2021-09-22", "datePublished": "2021-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium sp." ], "sample_taxid": [ "409" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: International Space Station" ], "sample_host_location_id": [], "data_size": "1.834 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 65.0, "max": 65.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6808664", "Number of Sequences": "182", "Longest Sequences (bp)": "334849", "N50 (bp)": "83968", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.9", "Number of CDSs": "6339", "Average Protein Length": "304.1", "Coding Ratio (%)": "84.9", "Number of rRNAs": "2", "Number of tRNAs": "86", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium ajmalii", "strain": "strain=IF7SW-B2", "accession": "GCA_016613415.1", "taxid": 2738439, "species_taxid": 2738439, "relation_to_type": "type", "validated": true, "ani": 99.9518, "matched_fragments": 2092, "total_fragments": 2184, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylobacterium indicum", "strain": "strain=SE2.11", "accession": "GCA_001043895.1", "taxid": 1775910, "species_taxid": 1775910, "relation_to_type": "type", "validated": true, "ani": 93.0293, "matched_fragments": 1576, "total_fragments": 2184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terrae", "strain": "strain=17Sr1-28", "accession": "GCA_003173755.1", "taxid": 2202827, "species_taxid": 2202827, "relation_to_type": "type", "validated": true, "ani": 90.4962, "matched_fragments": 1578, "total_fragments": 2184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium platani", "strain": "strain=PMB02", "accession": "GCA_001653715.1", "taxid": 427683, "species_taxid": 427683, "relation_to_type": "type", "validated": true, "ani": 90.4178, "matched_fragments": 1633, "total_fragments": 2184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium currus", "strain": "strain=PR1016A", "accession": "GCA_003058325.1", "taxid": 2051553, "species_taxid": 2051553, "relation_to_type": "type", "validated": true, "ani": 90.4007, "matched_fragments": 1758, "total_fragments": 2184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium platani", "strain": "strain=JCM 14648", "accession": "GCA_001043885.1", "taxid": 427683, "species_taxid": 427683, "relation_to_type": "type", "validated": true, "ani": 90.3396, "matched_fragments": 1459, "total_fragments": 2184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=JCM 32048", "accession": "GCA_022179185.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 89.7728, "matched_fragments": 1620, "total_fragments": 2184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tarhaniae", "strain": "strain=DSM 25844", "accession": "GCA_001043955.1", "taxid": 1187852, "species_taxid": 1187852, "relation_to_type": "type", "validated": true, "ani": 89.7635, "matched_fragments": 1460, "total_fragments": 2184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium 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"strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 84.8621, "matched_fragments": 1381, "total_fragments": 2184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 84.8471, "matched_fragments": 1320, "total_fragments": 2184, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016613415.1", "gtdb_species": "s__Methylobacterium ajmalii", "ani": 99.9518, "matched_fragments": 2092, "total_fragments": 2184, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", 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