{
    "type": "genome",
    "identifier": "GCA_020161135.1",
    "organism": "Gemmatimonadota bacterium",
    "title": "Gemmatimonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Wisconsin-Madison",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020161135.1",
        "bioproject": "PRJNA714686",
        "biosample": "SAMN21435376",
        "wgs_master": "JAIUOB000000000.1",
        "refseq_category": "na",
        "taxid": "2026742",
        "species_taxid": "2026742",
        "organism_name": "Gemmatimonadota bacterium",
        "infraspecific_name": "",
        "isolate": "GEMMA1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/27",
        "asm_name": "ASM2016113v1",
        "submitter": "University of Wisconsin-Madison",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/161/135/GCA_020161135.1_ASM2016113v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-27",
    "dateModified": "2021-09-27",
    "datePublished": "2021-09-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gemmatimonadota bacterium"
        ],
        "sample_taxid": [
            "2026742"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Madison, Wisconsin"
        ],
        "sample_host_location_id": [],
        "data_size": "1.222 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4545183",
        "Number of Sequences": "8",
        "Longest Sequences (bp)": "1171919",
        "N50 (bp)": "701481",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.1",
        "Number of CDSs": "3858",
        "Average Protein Length": "366.2",
        "Coding Ratio (%)": "93.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gemmatimonas aurantiaca",
                "strain": "strain=T-27",
                "accession": "GCA_000010305.1",
                "taxid": 173480,
                "species_taxid": 173480,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1139,
                "matched_fragments": 534,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatimonas groenlandica",
                "strain": "strain=TET16",
                "accession": "GCA_013004105.1",
                "taxid": 2732249,
                "species_taxid": 2732249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.697,
                "matched_fragments": 575,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatimonas phototrophica",
                "strain": "strain=AP64",
                "accession": "GCA_000695095.2",
                "taxid": 1379270,
                "species_taxid": 1379270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4913,
                "matched_fragments": 513,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatirosa kalamazoonensis",
                "strain": "strain=KBS708",
                "accession": "GCA_000522985.1",
                "taxid": 861299,
                "species_taxid": 861299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0096,
                "matched_fragments": 525,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longimicrobium terrae",
                "strain": "strain=CB-286315",
                "accession": "GCA_013000925.1",
                "taxid": 1639882,
                "species_taxid": 1639882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6032,
                "matched_fragments": 191,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorhodospira neutriphila",
                "strain": "strain=DSM 15116",
                "accession": "GCA_016584055.1",
                "taxid": 168379,
                "species_taxid": 168379,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1748,
                "matched_fragments": 70,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidihalobacter prosperus",
                "strain": "strain=DSM 5130",
                "accession": "GCA_000754095.2",
                "taxid": 160660,
                "species_taxid": 160660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1397,
                "matched_fragments": 65,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquabacterium fontiphilum",
                "strain": "strain=CS-6",
                "accession": "GCA_009909205.1",
                "taxid": 450365,
                "species_taxid": 450365,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0718,
                "matched_fragments": 51,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurifustis variabilis",
                "strain": "strain=skN76",
                "accession": "GCA_002355415.1",
                "taxid": 1675686,
                "species_taxid": 1675686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0664,
                "matched_fragments": 91,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dokdonella koreensis",
                "strain": "strain=DS-123",
                "accession": "GCA_001632775.1",
                "taxid": 323415,
                "species_taxid": 323415,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0038,
                "matched_fragments": 146,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium ureisolvens",
                "strain": "strain=CFH S00084",
                "accession": "GCA_015278315.1",
                "taxid": 2781186,
                "species_taxid": 2781186,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9036,
                "matched_fragments": 129,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Catellatospora sichuanensis",
                "strain": "strain=H14505",
                "accession": "GCA_007483665.1",
                "taxid": 1969805,
                "species_taxid": 1969805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8887,
                "matched_fragments": 174,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sandaracinus amylolyticus",
                "strain": "strain=DSM 53668",
                "accession": "GCA_000737325.2",
                "taxid": 927083,
                "species_taxid": 927083,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8592,
                "matched_fragments": 377,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002483225.1",
                "gtdb_species": "s__Gemmatimonas sp002483225",
                "ani": 79.9064,
                "matched_fragments": 647,
                "total_fragments": 1510,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.70",
                "min_intra_species_ani": "97.70",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016741895.1",
                "gtdb_species": "s__Gemmatimonas sp016741895",
                "ani": 79.688,
                "matched_fragments": 568,
                "total_fragments": 1510,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000010305.1",
                "gtdb_species": "s__Gemmatimonas aurantiaca",
                "ani": 79.127,
                "matched_fragments": 532,
                "total_fragments": 1510,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018969225.1",
                "gtdb_species": "s__Gemmatimonas sp018969225",
                "ani": 78.7655,
                "matched_fragments": 486,
                "total_fragments": 1510,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013004105.1",
                "gtdb_species": "s__Gemmatimonas sp013004105",
                "ani": 78.6867,
                "matched_fragments": 577,
                "total_fragments": 1510,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016742275.1",
                "gtdb_species": "s__Gemmatimonas sp016742275",
                "ani": 78.6267,
                "matched_fragments": 447,
                "total_fragments": 1510,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000695095.2",
                "gtdb_species": "s__Gemmatimonas phototrophica",
                "ani": 78.5072,
                "matched_fragments": 511,
                "total_fragments": 1510,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903900795.1",
                "gtdb_species": "s__Gemmatimonas sp903900795",
                "ani": 78.4093,
                "matched_fragments": 425,
                "total_fragments": 1510,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016720905.1",
                "gtdb_species": "s__Gemmatimonas sp016720905",
                "ani": 77.864,
                "matched_fragments": 397,
                "total_fragments": 1510,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011390935.1",
                "gtdb_species": "s__JAABRT01 sp011390935",
                "ani": 77.7506,
                "matched_fragments": 378,
                "total_fragments": 1510,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JAABRT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016584055.1",
                "gtdb_species": "s__Halorhodospira neutriphila",
                "ani": 75.1748,
                "matched_fragments": 70,
                "total_fragments": 1510,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Halorhodospiraceae;g__Halorhodospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002355415.1",
                "gtdb_species": "s__Sulfurifustis variabilis",
                "ani": 75.0543,
                "matched_fragments": 93,
                "total_fragments": 1510,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidiferrobacterales;f__Sulfurifustaceae;g__Sulfurifustis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001632775.1",
                "gtdb_species": "s__Dokdonella koreensis",
                "ani": 74.995,
                "matched_fragments": 148,
                "total_fragments": 1510,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dokdonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__Gemmatimonadaceae",
        "g__Gemmatimonas",
        "s__Gemmatimonas sp020161135"
    ],
    "_genome_taxon": [
        "Gemmatimonadota",
        "bacterium",
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__Gemmatimonadaceae",
        "g__Gemmatimonas",
        "s__Gemmatimonas sp020161135",
        "Bacteria",
        "Gemmatimonadota",
        "Gemmatimonadetes",
        "Gemmatimonadales",
        "Gemmatimonadaceae",
        "Gemmatimonas",
        "Gemmatimonas",
        "sp020161135"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}