{
    "type": "genome",
    "identifier": "GCA_020161695.1",
    "organism": "Pseudomonadota bacterium",
    "title": "Pseudomonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Wisconsin-Madison",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020161695.1",
        "bioproject": "PRJNA714686",
        "biosample": "SAMN21435390",
        "wgs_master": "JAIUOO000000000.1",
        "refseq_category": "na",
        "taxid": "1977087",
        "species_taxid": "1977087",
        "organism_name": "Pseudomonadota bacterium",
        "infraspecific_name": "",
        "isolate": "PHREA1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/27",
        "asm_name": "ASM2016169v1",
        "submitter": "University of Wisconsin-Madison",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/161/695/GCA_020161695.1_ASM2016169v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-27",
    "dateModified": "2021-09-27",
    "datePublished": "2021-09-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadota bacterium"
        ],
        "sample_taxid": [
            "1977087"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Madison, Wisconsin"
        ],
        "sample_host_location_id": [],
        "data_size": "1.277 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 72.69,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4694024",
        "Number of Sequences": "38",
        "Longest Sequences (bp)": "598767",
        "N50 (bp)": "161509",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.7",
        "Number of CDSs": "4581",
        "Average Protein Length": "306.6",
        "Coding Ratio (%)": "89.8",
        "Number of rRNAs": "1",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Phreatobacter cathodiphilus",
                "strain": "strain=S-12",
                "accession": "GCA_003008515.1",
                "taxid": 1868589,
                "species_taxid": 1868589,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9404,
                "matched_fragments": 1079,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phreatobacter oligotrophus",
                "strain": "strain=DSM 25521",
                "accession": "GCA_003046185.1",
                "taxid": 1122261,
                "species_taxid": 1122261,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7491,
                "matched_fragments": 1061,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phreatobacter stygius",
                "strain": "strain=KCTC 52518",
                "accession": "GCA_005144885.1",
                "taxid": 1940610,
                "species_taxid": 1940610,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2942,
                "matched_fragments": 1057,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chelatococcus caeni",
                "strain": "strain=DSM 103737",
                "accession": "GCA_014196925.1",
                "taxid": 1348468,
                "species_taxid": 1348468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2385,
                "matched_fragments": 494,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Starkeya novella",
                "strain": "strain=DSM 506",
                "accession": "GCA_000092925.1",
                "taxid": 921,
                "species_taxid": 921,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1926,
                "matched_fragments": 468,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microvirga thermotolerans",
                "strain": "strain=HR1",
                "accession": "GCA_009363855.1",
                "taxid": 2651334,
                "species_taxid": 2651334,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1197,
                "matched_fragments": 353,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microvirga splendida",
                "strain": "strain=BT325",
                "accession": "GCA_016427565.1",
                "taxid": 2795727,
                "species_taxid": 2795727,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8727,
                "matched_fragments": 357,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ancylobacter dichloromethanicus",
                "strain": "strain=VKM B-2484",
                "accession": "GCA_018390645.1",
                "taxid": 518825,
                "species_taxid": 518825,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8608,
                "matched_fragments": 431,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microvirga subterranea",
                "strain": "strain=DSM 14364",
                "accession": "GCA_003350535.1",
                "taxid": 186651,
                "species_taxid": 186651,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8293,
                "matched_fragments": 377,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chelatococcus composti",
                "strain": "strain=DSM 101465",
                "accession": "GCA_018398355.1",
                "taxid": 1743235,
                "species_taxid": 1743235,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8069,
                "matched_fragments": 389,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azorhizobium doebereinerae",
                "strain": "strain=UFLA1-100",
                "accession": "GCA_000473085.1",
                "taxid": 281091,
                "species_taxid": 281091,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7698,
                "matched_fragments": 469,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium guangxiense",
                "strain": "strain=CCBAU 53363",
                "accession": "GCA_004114915.1",
                "taxid": 1325115,
                "species_taxid": 1325115,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.743,
                "matched_fragments": 475,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blastochloris viridis",
                "strain": "strain=DSM 133",
                "accession": "GCA_001548155.2",
                "taxid": 1079,
                "species_taxid": 1079,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.677,
                "matched_fragments": 382,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthobacter tagetidis",
                "strain": "strain=DSM 11105",
                "accession": "GCA_014206845.1",
                "taxid": 60216,
                "species_taxid": 60216,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.656,
                "matched_fragments": 473,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blastochloris viridis",
                "strain": "strain=ATCC 19567",
                "accession": "GCA_001402875.1",
                "taxid": 1079,
                "species_taxid": 1079,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6435,
                "matched_fragments": 379,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium nitroreducens",
                "strain": "strain=TSA1",
                "accession": "GCA_002776695.1",
                "taxid": 709803,
                "species_taxid": 709803,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.579,
                "matched_fragments": 508,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium oryzihabitans",
                "strain": "strain=TER-1",
                "accession": "GCA_004004555.2",
                "taxid": 2499852,
                "species_taxid": 2499852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4858,
                "matched_fragments": 537,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium adhaesivum",
                "strain": "strain=DSM 17169",
                "accession": "GCA_022179065.1",
                "taxid": 333297,
                "species_taxid": 333297,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3699,
                "matched_fragments": 301,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium goesingense",
                "strain": "strain=DSM 21331",
                "accession": "GCA_022179225.1",
                "taxid": 243690,
                "species_taxid": 243690,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2184,
                "matched_fragments": 336,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oricola indica",
                "strain": "strain=JL-62",
                "accession": "GCA_019966595.1",
                "taxid": 2872591,
                "species_taxid": 2872591,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9547,
                "matched_fragments": 256,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Reyranella aquatilis",
                "strain": "strain=KCTC 52223",
                "accession": "GCA_020880995.1",
                "taxid": 2035356,
                "species_taxid": 2035356,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8658,
                "matched_fragments": 333,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Reyranella massiliensis",
                "strain": "strain=521",
                "accession": "GCA_000312425.1",
                "taxid": 445220,
                "species_taxid": 445220,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6508,
                "matched_fragments": 287,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vineibacter terrae",
                "strain": "strain=CC-CFT640",
                "accession": "GCA_008039615.1",
                "taxid": 2586908,
                "species_taxid": 2586908,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5993,
                "matched_fragments": 412,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Reyranella soli",
                "strain": "strain=NBRC 108950",
                "accession": "GCA_007992495.1",
                "taxid": 1230389,
                "species_taxid": 1230389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5676,
                "matched_fragments": 392,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum moscoviense",
                "strain": "strain=BB-1",
                "accession": "GCA_001650635.1",
                "taxid": 1437059,
                "species_taxid": 1437059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4852,
                "matched_fragments": 173,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 72.69,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016793595.1",
                "gtdb_species": "s__Phreatobacter sp016793595",
                "ani": 92.4982,
                "matched_fragments": 1352,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Phreatobacteraceae;g__Phreatobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003008515.1",
                "gtdb_species": "s__Phreatobacter cathodiphilus",
                "ani": 83.9752,
                "matched_fragments": 1076,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Phreatobacteraceae;g__Phreatobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003046185.1",
                "gtdb_species": "s__Phreatobacter oligotrophus",
                "ani": 83.764,
                "matched_fragments": 1059,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Phreatobacteraceae;g__Phreatobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001464235.1",
                "gtdb_species": "s__Phreatobacter sp001464235",
                "ani": 83.7154,
                "matched_fragments": 898,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Phreatobacteraceae;g__Phreatobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005160265.1",
                "gtdb_species": "s__Phreatobacter sp005160265",
                "ani": 81.8973,
                "matched_fragments": 956,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Phreatobacteraceae;g__Phreatobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000751295.2",
                "gtdb_species": "s__Phreatobacter sp000751295",
                "ani": 81.7172,
                "matched_fragments": 1043,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Phreatobacteraceae;g__Phreatobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017304475.1",
                "gtdb_species": "s__Phreatobacter sp017304475",
                "ani": 81.6614,
                "matched_fragments": 1073,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Phreatobacteraceae;g__Phreatobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005144885.1",
                "gtdb_species": "s__Phreatobacter stygius",
                "ani": 81.2717,
                "matched_fragments": 1060,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Phreatobacteraceae;g__Phreatobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016467395.1",
                "gtdb_species": "s__Reyranella sp016467395",
                "ani": 76.7968,
                "matched_fragments": 370,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005884705.1",
                "gtdb_species": "s__Reyranella sp005884705",
                "ani": 76.7792,
                "matched_fragments": 250,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016780605.1",
                "gtdb_species": "s__Reyranella sp016780605",
                "ani": 76.6342,
                "matched_fragments": 212,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900110395.1",
                "gtdb_species": "s__Reyranella sp900110395",
                "ani": 76.6241,
                "matched_fragments": 373,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007992495.1",
                "gtdb_species": "s__Reyranella soli",
                "ani": 76.5539,
                "matched_fragments": 397,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Phreatobacteraceae",
        "g__Phreatobacter",
        "s__Phreatobacter sp020161695"
    ],
    "_genome_taxon": [
        "Pseudomonadota",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Phreatobacteraceae",
        "g__Phreatobacter",
        "s__Phreatobacter sp020161695",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhizobiales",
        "Phreatobacteraceae",
        "Phreatobacter",
        "Phreatobacter",
        "sp020161695"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}