{ "type": "genome", "identifier": "GCA_020161795.1", "organism": "Actinomycetota bacterium", "title": "Actinomycetota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Wisconsin-Madison", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020161795.1", "bioproject": "PRJNA714686", "biosample": "SAMN21435355", "wgs_master": "JAIUOR000000000.1", "refseq_category": "na", "taxid": "2900548", "species_taxid": "2900548", "organism_name": "Actinomycetota bacterium", "infraspecific_name": "", "isolate": "PROP1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/27", "asm_name": "ASM2016179v1", "submitter": "University of Wisconsin-Madison", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/161/795/GCA_020161795.1_ASM2016179v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-27", "dateModified": "2021-09-27", "datePublished": "2021-09-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Madison, Wisconsin" ], "sample_host_location_id": [], "data_size": "0.944 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 84.26, "contamination": 2.79, "strain_heterogeneity": 71.43, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3467569", "Number of Sequences": "67", "Longest Sequences (bp)": "228584", "N50 (bp)": "84193", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.3", "Number of CDSs": "3246", "Average Protein Length": "323.1", "Coding Ratio (%)": "90.7", "Number of rRNAs": "0", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Propionicimonas paludicola", "strain": "strain=DSM 15597", "accession": "GCA_002563675.1", "taxid": 185243, "species_taxid": 185243, "relation_to_type": "type", "validated": true, "ani": 79.6873, "matched_fragments": 390, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava coleopterorum", "strain": "strain=HDW11", "accession": "GCA_011393335.1", "taxid": 2714937, "species_taxid": 2714937, "relation_to_type": "type", "validated": true, "ani": 78.5252, "matched_fragments": 345, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava sinopodophylli", "strain": "strain=KCTC 33808", "accession": "GCA_004324755.1", "taxid": 1837344, "species_taxid": 1837344, "relation_to_type": "type", "validated": true, "ani": 78.3872, "matched_fragments": 324, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micropruina glycogenica", "strain": "", "accession": "GCA_900289045.1", "taxid": 75385, "species_taxid": 75385, "relation_to_type": "type", "validated": true, "ani": 78.2473, "matched_fragments": 372, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava tarda", "strain": "strain=DSM 22130", "accession": "GCA_004324765.1", "taxid": 433330, "species_taxid": 433330, "relation_to_type": "type", "validated": true, "ani": 77.8671, "matched_fragments": 263, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Auraticoccus cholistanensis", "strain": "strain=F435", "accession": "GCA_009742705.1", "taxid": 2656650, "species_taxid": 2656650, "relation_to_type": "type", "validated": true, "ani": 77.8389, "matched_fragments": 330, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava tarda", "strain": "strain=DSM 22130", "accession": "GCA_900182665.1", "taxid": 433330, "species_taxid": 433330, "relation_to_type": "type", "validated": true, "ani": 77.803, "matched_fragments": 270, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans aurantiacus", "strain": "strain=CPCC 204711", "accession": "GCA_003344635.1", "taxid": 2282477, "species_taxid": 2282477, "relation_to_type": "type", "validated": true, "ani": 77.753, "matched_fragments": 294, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus rhinocerotis", "strain": "strain=YIM 101269", "accession": "GCA_007197885.1", "taxid": 1689449, "species_taxid": 1689449, "relation_to_type": "type", "validated": true, "ani": 77.7462, "matched_fragments": 225, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteococcus japonicus", "strain": "strain=DSM 10546", "accession": "GCA_003752415.1", "taxid": 33984, "species_taxid": 33984, "relation_to_type": "type", "validated": true, "ani": 77.7412, "matched_fragments": 230, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans brevis", "strain": "strain=16Sb5-5", "accession": "GCA_003327535.1", "taxid": 2268447, "species_taxid": 2268447, "relation_to_type": "type", "validated": true, "ani": 77.6667, "matched_fragments": 326, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus kandeliicorticis", "strain": "strain=DSM 100723", "accession": "GCA_014137855.1", "taxid": 1759536, "species_taxid": 1759536, "relation_to_type": "type", "validated": true, "ani": 77.623, "matched_fragments": 309, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Naumannella cuiyingiana", "strain": "strain=DSM 103164", "accession": "GCA_013408305.1", "taxid": 1347891, "species_taxid": 1347891, "relation_to_type": "type", "validated": true, "ani": 77.5837, "matched_fragments": 257, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Auraticoccus monumenti", "strain": "strain=MON 2.2", "accession": "GCA_900101785.1", "taxid": 675864, "species_taxid": 675864, "relation_to_type": "type", "validated": true, "ani": 77.58, "matched_fragments": 314, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus flavus", "strain": "strain=CGMCC 4.6856", "accession": "GCA_900110855.1", "taxid": 1036181, "species_taxid": 1036181, "relation_to_type": "type", "validated": true, "ani": 77.2777, "matched_fragments": 273, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 77.0811, "matched_fragments": 214, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 77.0762, "matched_fragments": 245, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 76.9099, "matched_fragments": 200, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Embleya hyalina", "strain": "strain=NBRC 13850", "accession": "GCA_003967355.1", "taxid": 516124, "species_taxid": 516124, "relation_to_type": "type", "validated": true, "ani": 75.9447, "matched_fragments": 290, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes teichomyceticus", "strain": "strain=NBRC 13999", "accession": "GCA_016862415.1", "taxid": 1867, "species_taxid": 1867, "relation_to_type": "type", "validated": true, "ani": 75.9039, "matched_fragments": 266, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes teichomyceticus", "strain": "strain=ATCC 31121", "accession": "GCA_003711105.1", "taxid": 1867, "species_taxid": 1867, "relation_to_type": "type", "validated": true, "ani": 75.8681, "matched_fragments": 271, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" } ], 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