{ "type": "genome", "identifier": "GCA_020161845.1", "organism": "Actinomycetota bacterium", "title": "Actinomycetota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Wisconsin-Madison", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020161845.1", "bioproject": "PRJNA714686", "biosample": "SAMN21435346", "wgs_master": "JAIUNK000000000.1", "refseq_category": "na", "taxid": "2900548", "species_taxid": "2900548", "organism_name": "Actinomycetota bacterium", "infraspecific_name": "", "isolate": "AUS1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/27", "asm_name": "ASM2016184v1", "submitter": "University of Wisconsin-Madison", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/161/845/GCA_020161845.1_ASM2016184v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-27", "dateModified": "2021-09-27", "datePublished": "2021-09-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Madison, Wisconsin" ], "sample_host_location_id": [], "data_size": "1.191 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4392256", "Number of Sequences": "82", "Longest Sequences (bp)": "276559", "N50 (bp)": "111423", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.2", "Number of CDSs": "4105", "Average Protein Length": "317.0", "Coding Ratio (%)": "88.9", "Number of rRNAs": "1", "Number of tRNAs": "61", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kineosphaera limosa", "strain": "strain=DSM 14548", "accession": "GCA_013409325.1", "taxid": 111564, "species_taxid": 111564, "relation_to_type": "type", "validated": true, "ani": 78.4645, "matched_fragments": 457, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineosphaera limosa", "strain": "strain=NBRC 100340", "accession": "GCA_000298215.1", "taxid": 111564, "species_taxid": 111564, "relation_to_type": "type", "validated": true, "ani": 78.4609, "matched_fragments": 437, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Austwickia chelonae", "strain": "strain=NBRC 105200", "accession": "GCA_000298175.1", "taxid": 100225, "species_taxid": 100225, "relation_to_type": "type", "validated": true, "ani": 78.4353, "matched_fragments": 345, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Austwickia chelonae", "strain": "strain=DSM 44178", "accession": "GCA_900111385.1", "taxid": 100225, "species_taxid": 100225, "relation_to_type": "type", "validated": true, "ani": 78.3999, "matched_fragments": 354, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus bolidensis", "strain": "strain=DSM 15745", "accession": "GCA_000426385.1", "taxid": 229480, "species_taxid": 229480, "relation_to_type": "type", "validated": true, "ani": 78.1905, "matched_fragments": 402, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mobilicoccus massiliensis", "strain": "strain=SIT2", "accession": "GCA_000826525.2", "taxid": 1522310, "species_taxid": 1522310, "relation_to_type": "type", "validated": true, "ani": 78.1259, "matched_fragments": 409, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus piscis", "strain": "strain=DSM 22760", "accession": "GCA_022568835.1", "taxid": 673954, "species_taxid": 673954, "relation_to_type": "type", "validated": true, "ani": 78.0789, "matched_fragments": 387, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus dermatophilus", "strain": "strain=DSM 25571", "accession": "GCA_022568795.1", "taxid": 1076331, "species_taxid": 1076331, "relation_to_type": "type", "validated": true, "ani": 78.046, "matched_fragments": 387, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus cauae", "strain": "strain=MKL-02", "accession": "GCA_009707125.1", "taxid": 2663847, "species_taxid": 2663847, "relation_to_type": "type", "validated": true, "ani": 78.0344, "matched_fragments": 378, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia remsis", "strain": "strain=ATCC BAA-1496", "accession": "GCA_003002895.1", "taxid": 407159, "species_taxid": 407159, "relation_to_type": "type", "validated": true, "ani": 78.0105, "matched_fragments": 319, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Barrientosiimonas humi", "strain": "strain=type strain: 39", "accession": "GCA_910573815.1", "taxid": 999931, "species_taxid": 999931, "relation_to_type": "type", "validated": true, "ani": 77.8778, "matched_fragments": 395, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Barrientosiimonas humi", "strain": "strain=DSM 24617", "accession": "GCA_006716095.1", "taxid": 999931, "species_taxid": 999931, "relation_to_type": "type", "validated": true, "ani": 77.8123, "matched_fragments": 401, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus endophyticus", "strain": "strain=IP6SC6", "accession": "GCA_011326735.1", "taxid": 1690220, "species_taxid": 1690220, "relation_to_type": "type", "validated": true, "ani": 77.6855, "matched_fragments": 337, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus endophyticus", "strain": "strain=CGMCC 4.7300", "accession": "GCA_014646175.1", "taxid": 1690220, "species_taxid": 1690220, "relation_to_type": "type", "validated": true, "ani": 77.681, "matched_fragments": 341, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter endophyticus", "strain": "strain=YIM B02568", "accession": "GCA_016888335.1", "taxid": 2806261, "species_taxid": 2806261, "relation_to_type": "type", "validated": true, "ani": 77.6742, "matched_fragments": 298, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter anophelis", "strain": "strain=NBRC 107843", "accession": "GCA_001570945.1", "taxid": 319054, "species_taxid": 319054, "relation_to_type": "type", "validated": true, "ani": 77.6488, "matched_fragments": 295, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia flava", "strain": "strain=TL1", "accession": "GCA_000768675.1", "taxid": 913969, "species_taxid": 913969, "relation_to_type": "type", "validated": true, "ani": 77.6425, "matched_fragments": 305, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium humiphilum", "strain": "strain=DSM 12362", "accession": "GCA_006716885.1", "taxid": 125288, "species_taxid": 125288, "relation_to_type": "type", "validated": true, "ani": 77.6401, "matched_fragments": 324, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter terrae", "strain": "strain=NBRC 107853", "accession": "GCA_001591405.1", "taxid": 103817, "species_taxid": 103817, "relation_to_type": "type", "validated": true, "ani": 77.6339, "matched_fragments": 304, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium murale", "strain": "strain=DSM 22056", "accession": "GCA_003352835.1", "taxid": 1050153, "species_taxid": 1050153, "relation_to_type": "type", "validated": true, "ani": 77.546, "matched_fragments": 191, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium pekingense", "strain": "strain=DSM 21552", "accession": "GCA_000421185.1", "taxid": 384677, "species_taxid": 384677, "relation_to_type": "type", "validated": true, "ani": 77.5251, "matched_fragments": 356, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium sediminis", "strain": "strain=EGI L100131", "accession": "GCA_021272345.1", "taxid": 2904603, "species_taxid": 2904603, "relation_to_type": "type", "validated": true, "ani": 77.5204, "matched_fragments": 290, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium pekingense", "strain": "strain=CGMCC 1.5362", "accession": "GCA_014644955.1", "taxid": 384677, "species_taxid": 384677, "relation_to_type": "type", "validated": true, "ani": 77.5016, "matched_fragments": 353, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter melonis", "strain": "strain=NBRC107855", "accession": "GCA_020567375.1", "taxid": 262209, "species_taxid": 262209, "relation_to_type": "type", "validated": true, "ani": 77.4531, "matched_fragments": 323, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineosporia rhizophila", "strain": "strain=JCM 9960", "accession": "GCA_021277265.1", "taxid": 84633, "species_taxid": 84633, "relation_to_type": "type", "validated": true, "ani": 76.467, "matched_fragments": 354, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lycii", "strain": "strain=TRM 66187", "accession": "GCA_009735685.1", "taxid": 2654337, "species_taxid": 2654337, "relation_to_type": "type", "validated": true, "ani": 76.1901, "matched_fragments": 319, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura bangladeshensis", "strain": "strain=DSM 45347", "accession": "GCA_004348335.1", "taxid": 453573, "species_taxid": 453573, "relation_to_type": "type", "validated": true, "ani": 76.0148, "matched_fragments": 363, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura physcomitrii", "strain": "strain=LD22", "accession": "GCA_008923205.2", "taxid": 2650748, "species_taxid": 2650748, "relation_to_type": "type", "validated": true, "ani": 75.9079, "matched_fragments": 410, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016699675.1", "gtdb_species": "s__Austwickia sp016699675", "ani": 82.4135, "matched_fragments": 904, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Austwickia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001515525.1", "gtdb_species": "s__Piscicoccus intestinalis", "ani": 78.4895, "matched_fragments": 443, "total_fragments": 1430, "gtdb_taxonomy": 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