{ "type": "genome", "identifier": "GCA_020200715.1", "organism": "Actinomycetota bacterium", "title": "Actinomycetota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020200715.1", "bioproject": "PRJNA291433", "biosample": "SAMN18623590", "wgs_master": "JAIVIF000000000.1", "refseq_category": "na", "taxid": "2900548", "species_taxid": "2900548", "organism_name": "Actinomycetota bacterium", "infraspecific_name": "", "isolate": "MAG51", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/30", "asm_name": "ASM2020071v1", "submitter": "Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/200/715/GCA_020200715.1_ASM2020071v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-30", "dateModified": "2021-09-30", "datePublished": "2021-09-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile: Atacama Desert, between Atacama Salar and Lejia lagoon" ], "sample_host_location_id": [], "data_size": "0.962 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 89.29, "contamination": 13.43, "strain_heterogeneity": 10.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3614656", "Number of Sequences": "160", "Longest Sequences (bp)": "127122", "N50 (bp)": "36961", "Gap Ratio (%)": "0.049161", "GCcontent (%)": "72.3", "Number of CDSs": "3509", "Average Protein Length": "299.8", "Coding Ratio (%)": "87.3", "Number of rRNAs": "1", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Motilibacter rhizosphaerae", "strain": "strain=DSM 45622", "accession": "GCA_004216915.1", "taxid": 598652, "species_taxid": 598652, "relation_to_type": "type", "validated": true, "ani": 77.3559, "matched_fragments": 318, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus normandii", "strain": "strain=DSM 45417", "accession": "GCA_003182485.1", "taxid": 1137989, "species_taxid": 1137989, "relation_to_type": "type", "validated": true, "ani": 77.234, "matched_fragments": 388, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus saxobsidens", "strain": "strain=DSM 44509", "accession": "GCA_004217455.1", "taxid": 138336, "species_taxid": 138336, "relation_to_type": "type", "validated": true, "ani": 77.1946, "matched_fragments": 340, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 77.1931, "matched_fragments": 317, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporichthya polymorpha", "strain": "strain=DSM 43042", "accession": "GCA_000384115.1", "taxid": 35751, "species_taxid": 35751, "relation_to_type": "type", "validated": true, "ani": 77.0973, "matched_fragments": 311, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus xanthinilyticus", "strain": "strain=DSM 46842", "accession": "GCA_008124835.1", "taxid": 1564164, "species_taxid": 1564164, "relation_to_type": "type", "validated": true, "ani": 77.0199, "matched_fragments": 347, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura logoneensis", "strain": "strain=NEAU-G17", "accession": "GCA_003428695.1", "taxid": 2293572, "species_taxid": 2293572, "relation_to_type": "type", "validated": true, "ani": 76.8868, "matched_fragments": 329, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora diospyrosa", "strain": "strain=DSM 44255", "accession": "GCA_024171925.1", "taxid": 103728, "species_taxid": 103728, "relation_to_type": "type", "validated": true, "ani": 76.8477, "matched_fragments": 291, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frankia alni", "strain": "strain=ACN14a", "accession": "GCA_000058485.1", "taxid": 1859, "species_taxid": 1859, "relation_to_type": "type", "validated": true, "ani": 76.826, "matched_fragments": 342, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora baliensis", "strain": "strain=DSM 45656", "accession": "GCA_016907695.1", "taxid": 547056, "species_taxid": 547056, "relation_to_type": "type", "validated": true, "ani": 76.8199, "matched_fragments": 298, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora terrae", "strain": "strain=DSM 44260", "accession": "GCA_900111175.1", "taxid": 155974, "species_taxid": 155974, "relation_to_type": "type", "validated": true, "ani": 76.7703, "matched_fragments": 317, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora cianjurensis", "strain": "strain=DSM 45657", "accession": "GCA_003663795.1", "taxid": 585224, "species_taxid": 585224, "relation_to_type": "type", "validated": true, "ani": 76.7293, "matched_fragments": 311, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frankia torreyi", "strain": "strain=CpI1", "accession": "GCA_000948395.1", "taxid": 1856, "species_taxid": 1856, "relation_to_type": "type", "validated": true, "ani": 76.6967, "matched_fragments": 321, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora globicatena", "strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, "ani": 76.6879, "matched_fragments": 305, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura algeriensis", "strain": "strain=DSM 46744", "accession": "GCA_014873935.1", "taxid": 1679523, "species_taxid": 1679523, "relation_to_type": "type", "validated": true, "ani": 76.6834, "matched_fragments": 390, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 76.6078, "matched_fragments": 312, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudokineococcus marinus", "strain": "strain=JCM 14547", "accession": "GCA_013004605.1", "taxid": 351215, "species_taxid": 351215, "relation_to_type": "type", "validated": true, "ani": 76.5724, "matched_fragments": 237, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia broussonetiae", "strain": "strain=Gen 01", "accession": "GCA_013155125.1", "taxid": 2736640, "species_taxid": 2736640, "relation_to_type": "type", "validated": true, "ani": 76.5677, "matched_fragments": 432, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aridisoli", "strain": "strain=KC333", "accession": "GCA_003236395.1", "taxid": 2070368, "species_taxid": 2070368, "relation_to_type": "type", "validated": true, "ani": 76.557, "matched_fragments": 363, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis rhizosphaerae", "strain": "strain=TBRC 6029", "accession": "GCA_007713715.1", "taxid": 2053003, "species_taxid": 2053003, "relation_to_type": "type", "validated": true, "ani": 76.4791, "matched_fragments": 221, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium pseudovulgare", "strain": "strain=JCM 3115", "accession": "GCA_014648055.1", "taxid": 35765, "species_taxid": 35765, "relation_to_type": "type", "validated": true, "ani": 76.479, "matched_fragments": 339, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frankia soli", "strain": "strain=NRRL B-16219", "accession": "GCA_001854695.1", "taxid": 2599596, "species_taxid": 2599596, "relation_to_type": "type", "validated": true, "ani": 76.467, "matched_fragments": 312, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium minutum", "strain": "strain=M26", "accession": "GCA_002149035.1", "taxid": 569862, "species_taxid": 569862, "relation_to_type": "type", "validated": true, "ani": 76.4627, "matched_fragments": 297, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 76.4051, "matched_fragments": 398, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 76.4039, "matched_fragments": 291, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia autotrophica", "strain": "strain=NBRC 12743", "accession": "GCA_003945385.1", "taxid": 2074, "species_taxid": 2074, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3988, "matched_fragments": 349, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia autotrophica", "strain": "strain=DSM 535", "accession": "GCA_002119215.1", "taxid": 2074, "species_taxid": 2074, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3775, "matched_fragments": 343, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frankia discariae", "strain": "strain=BCU110501", "accession": "GCA_000373365.1", "taxid": 365528, "species_taxid": 365528, "relation_to_type": "type", "validated": true, "ani": 76.3668, "matched_fragments": 335, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis magusensis", "strain": "strain=DSM 45510", "accession": "GCA_017875555.1", "taxid": 882444, "species_taxid": 882444, "relation_to_type": "type", "validated": true, "ani": 76.2666, "matched_fragments": 325, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 89.29, "contamination": 13.43, "strain_heterogeneity": 10.0 }, "gtdb_result": [ { "accession": "GCA_016650445.1", "gtdb_species": "s__JAENVS01 sp016650445", "ani": 81.0565, "matched_fragments": 597, "total_fragments": 1128, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__SCTD01;g__JAENVS01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004299215.1", "gtdb_species": "s__SCTD01 sp004299215", "ani": 80.1164, "matched_fragments": 401, "total_fragments": 1128, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__SCTD01;g__SCTD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902805775.1", "gtdb_species": "s__SCTD01 sp902805775", "ani": 79.8808, "matched_fragments": 478, "total_fragments": 1128, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__SCTD01;g__SCTD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902805805.1", "gtdb_species": "s__SCTD01 sp902805805", "ani": 79.5989, "matched_fragments": 409, "total_fragments": 1128, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__SCTD01;g__SCTD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017882835.1", "gtdb_species": "s__JADGOU01 sp017882835", "ani": 77.5638, "matched_fragments": 230, "total_fragments": 1128, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__JADGOU01;g__JADGOU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004216915.1", "gtdb_species": "s__Motilibacter rhizosphaerae", "ani": 77.3469, "matched_fragments": 319, "total_fragments": 1128, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Motilibacterales;f__Motilibacteraceae;g__Motilibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000384115.1", "gtdb_species": "s__Sporichthya polymorpha", "ani": 77.1408, "matched_fragments": 305, "total_fragments": 1128, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Sporichthyales;f__Sporichthyaceae;g__Sporichthya", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000306785.1", "gtdb_species": "s__Modestobacter marinus_A", "ani": 77.0509, "matched_fragments": 375, "total_fragments": 1128, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008124835.1", "gtdb_species": "s__Blastococcus xanthinilyticus", "ani": 77.0494, "matched_fragments": 343, "total_fragments": 1128, "gtdb_taxonomy": 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinokineospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.61", "min_intra_species_ani": "95.61", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000948395.1", "gtdb_species": "s__Frankia torreyi", "ani": 76.711, "matched_fragments": 319, "total_fragments": 1128, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Frankiaceae;g__Frankia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.67", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_019263585.1", "gtdb_species": "s__Pseudonocardia sp019263585", "ani": 76.6764, "matched_fragments": 392, "total_fragments": 1128, "gtdb_taxonomy": 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