{ "type": "genome", "identifier": "GCA_020201075.1", "organism": "Halomonas sp.", "title": "Halomonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020201075.1", "bioproject": "PRJNA291433", "biosample": "SAMN18623562", "wgs_master": "JAIVHL000000000.1", "refseq_category": "na", "taxid": "1486246", "species_taxid": "1486246", "organism_name": "Halomonas sp.", "infraspecific_name": "", "isolate": "MAG25", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/30", "asm_name": "ASM2020107v1", "submitter": "Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/201/075/GCA_020201075.1_ASM2020107v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-30", "dateModified": "2021-09-30", "datePublished": "2021-09-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomonas sp." ], "sample_taxid": [ "1486246" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile: Atacama Desert, between Atacama Salar and Lejia lagoon" ], "sample_host_location_id": [], "data_size": "0.789 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.37, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2811876", "Number of Sequences": "260", "Longest Sequences (bp)": "71247", "N50 (bp)": "17448", "Gap Ratio (%)": "0.070807", "GCcontent (%)": "64.0", "Number of CDSs": "2522", "Average Protein Length": "297.6", "Coding Ratio (%)": "80.1", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 85.2754, "matched_fragments": 646, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 83.5981, "matched_fragments": 596, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ventosae", "strain": "strain=CECT 5797", "accession": "GCA_004363555.1", "taxid": 229007, "species_taxid": 229007, "relation_to_type": "type", "validated": true, "ani": 82.916, "matched_fragments": 595, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alimentaria", "strain": "strain=DSM 15356", "accession": "GCA_009902005.1", "taxid": 147248, "species_taxid": 147248, "relation_to_type": "type", "validated": true, "ani": 82.9014, "matched_fragments": 564, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=9-2", "accession": "GCA_003202165.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 82.5615, "matched_fragments": 562, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=DSM 26881", "accession": "GCA_002879645.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 82.4312, "matched_fragments": 564, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 82.4122, "matched_fragments": 569, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 82.4027, "matched_fragments": 571, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aestuarii", "strain": "strain=Hb3", "accession": "GCA_001886615.1", "taxid": 1897729, "species_taxid": 1897729, "relation_to_type": "type", "validated": true, "ani": 82.2104, "matched_fragments": 570, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas urmiana", "strain": "strain=TBZ3", "accession": "GCA_005780185.1", "taxid": 490901, "species_taxid": 490901, "relation_to_type": "type", "validated": true, "ani": 82.0665, "matched_fragments": 548, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 81.8553, "matched_fragments": 552, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas saccharevitans", "strain": "strain=CGMCC 1.6493", "accession": "GCA_900116405.1", "taxid": 416872, "species_taxid": 416872, "relation_to_type": "type", "validated": true, "ani": 81.8297, "matched_fragments": 551, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lactosivorans", "strain": "strain=KCTC 52281", "accession": "GCA_003254665.1", "taxid": 2185141, "species_taxid": 2185141, "relation_to_type": "type", "validated": true, "ani": 81.5075, "matched_fragments": 514, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 81.2378, "matched_fragments": 524, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 80.9849, "matched_fragments": 512, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 80.6515, "matched_fragments": 493, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.37, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003553625.1", "gtdb_species": "s__Halomonas sp003553625", "ani": 89.2363, "matched_fragments": 576, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.58", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.80", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_003560175.1", "gtdb_species": "s__Halomonas sp003560175", "ani": 87.4238, "matched_fragments": 450, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014859505.1", "gtdb_species": "s__Halomonas sp014859505", "ani": 86.8743, "matched_fragments": 607, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": 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"Gammaproteobacteria", "Pseudomonadales", "Halomonadaceae", "Halomonas", "Halomonas", "sp020201075" ], "_meo": [ { "id": "MEO_0000007", "label": "soil" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }