{ "type": "genome", "identifier": "GCA_020201335.1", "organism": "Xanthomonadaceae bacterium", "title": "Xanthomonadaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020201335.1", "bioproject": "PRJNA291433", "biosample": "SAMN18623550", "wgs_master": "JAIVGZ000000000.1", "refseq_category": "na", "taxid": "1926873", "species_taxid": "1926873", "organism_name": "Xanthomonadaceae bacterium", "infraspecific_name": "", "isolate": "MAG22", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/30", "asm_name": "ASM2020133v1", "submitter": "Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/201/335/GCA_020201335.1_ASM2020133v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-30", "dateModified": "2021-09-30", "datePublished": "2021-09-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Xanthomonadaceae bacterium" ], "sample_taxid": [ "1926873" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile: Atacama Desert, between Atacama Salar and Lejia lagoon" ], "sample_host_location_id": [], "data_size": "0.511 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 78.79, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1829008", "Number of Sequences": "77", "Longest Sequences (bp)": "132568", "N50 (bp)": "48781", "Gap Ratio (%)": "0.039366", "GCcontent (%)": "64.7", "Number of CDSs": "1768", "Average Protein Length": "310.6", "Coding Ratio (%)": "90.1", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arenimonas composti", "strain": "strain=DSM 18010", "accession": "GCA_000426365.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 76.7107, "matched_fragments": 88, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio nitratireducens", "strain": "strain=DSM 14787", "accession": "GCA_000321415.2", "taxid": 186931, "species_taxid": 186931, "relation_to_type": "type", "validated": true, "ani": 76.6123, "matched_fragments": 62, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas helianthi", "strain": "strain=110414", "accession": "GCA_017939625.1", "taxid": 1453541, "species_taxid": 1453541, "relation_to_type": "type", "validated": true, "ani": 76.5513, "matched_fragments": 71, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio paradoxus", "strain": "strain=ARh 1", "accession": "GCA_000227685.3", "taxid": 108010, "species_taxid": 108010, "relation_to_type": "type", "validated": true, "ani": 76.5258, "matched_fragments": 78, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 76.5077, "matched_fragments": 111, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella fugitiva", "strain": "strain=A3", "accession": "GCA_004342425.1", "taxid": 328517, "species_taxid": 328517, "relation_to_type": "type", "validated": true, "ani": 76.4696, "matched_fragments": 109, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 76.4149, "matched_fragments": 51, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter agaridevorans", "strain": "strain=SA29-B", "accession": "GCA_009932555.1", "taxid": 2695856, "species_taxid": 2695856, "relation_to_type": "type", "validated": true, "ani": 76.3666, "matched_fragments": 60, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 76.3661, "matched_fragments": 95, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria terrea", "strain": "strain=DSM 26515", "accession": "GCA_900109025.1", "taxid": 529704, "species_taxid": 529704, "relation_to_type": "type", "validated": true, "ani": 76.276, "matched_fragments": 62, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas viscosa", "strain": "strain=XBU10", "accession": "GCA_008244685.1", "taxid": 1132694, "species_taxid": 1132694, "relation_to_type": "type", "validated": true, "ani": 76.2614, "matched_fragments": 85, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalbus denitrificans", "strain": "strain=DSM 26407", "accession": "GCA_003337735.1", "taxid": 547122, "species_taxid": 547122, "relation_to_type": "type", "validated": true, "ani": 76.2356, "matched_fragments": 54, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria terrea", "strain": "strain=CGMCC 1.7053", "accession": "GCA_900115705.1", "taxid": 529704, "species_taxid": 529704, "relation_to_type": "type", "validated": true, "ani": 76.2185, "matched_fragments": 64, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurivermis fontis", "strain": "strain=JG42", "accession": "GCA_004001245.1", "taxid": 1972068, "species_taxid": 1972068, "relation_to_type": "type", "validated": true, "ani": 76.2054, "matched_fragments": 54, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas azotifigens", "strain": "strain=DSM 17556", "accession": "GCA_000425625.1", "taxid": 291995, "species_taxid": 291995, "relation_to_type": "type", "validated": true, "ani": 76.1801, "matched_fragments": 63, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidihalobacter prosperus", "strain": "strain=DSM 5130", "accession": "GCA_000754095.2", "taxid": 160660, "species_taxid": 160660, "relation_to_type": "type", "validated": true, "ani": 76.1599, "matched_fragments": 58, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arhodomonas aquaeolei", "strain": "strain=DSM 8974", "accession": "GCA_000374645.1", "taxid": 2369, "species_taxid": 2369, "relation_to_type": "type", "validated": true, "ani": 76.0773, "matched_fragments": 65, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalocapsa marina", "strain": "strain=DSM 19078", "accession": "GCA_008632335.1", "taxid": 424902, "species_taxid": 424902, "relation_to_type": "type", "validated": true, "ani": 76.0717, "matched_fragments": 50, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halofilum ochraceum", "strain": "strain=XJ16", "accession": "GCA_001614315.2", "taxid": 1611323, "species_taxid": 1611323, "relation_to_type": "type", "validated": true, "ani": 76.0641, "matched_fragments": 51, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans acidivorans", "strain": "strain=DSM 23606", "accession": "GCA_003182095.1", "taxid": 886464, "species_taxid": 886464, "relation_to_type": "type", "validated": true, "ani": 75.9239, "matched_fragments": 77, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 78.79, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011089885.1", "gtdb_species": "s__XN24 sp011089885", "ani": 76.9897, "matched_fragments": 89, "total_fragments": 570, "gtdb_taxonomy": 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