{ "type": "genome", "identifier": "GCA_020247085.1", "organism": "Myxococcaceae bacterium", "title": "Myxococcaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Universite de Montreal", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020247085.1", "bioproject": "PRJNA662092", "biosample": "SAMN16074925", "wgs_master": "JADCJJ000000000.1", "refseq_category": "na", "taxid": "2484252", "species_taxid": "2484252", "organism_name": "Myxococcaceae bacterium", "infraspecific_name": "", "isolate": "M069S2SP1A73QC", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/04", "asm_name": "ASM2024708v1", "submitter": "Universite de Montreal", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/247/085/GCA_020247085.1_ASM2024708v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-04", "dateModified": "2021-10-04", "datePublished": "2021-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Myxococcaceae bacterium" ], "sample_taxid": [ "2484252" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Quebec,Champlain Lake" ], "sample_host_location_id": [], "data_size": "1.955 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7356658", "Number of Sequences": "641", "Longest Sequences (bp)": "69770", "N50 (bp)": "17300", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.0", "Number of CDSs": "5757", "Average Protein Length": "338.2", "Coding Ratio (%)": "79.4", "Number of rRNAs": "1", "Number of tRNAs": "57", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Stigmatella aurantiaca", "strain": "strain=DSM 17044", "accession": "GCA_900109545.1", "taxid": 41, "species_taxid": 41, "relation_to_type": "type", "validated": true, "ani": 76.6049, "matched_fragments": 460, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella erecta", "strain": "strain=DSM 16858", "accession": "GCA_900111745.1", "taxid": 83460, "species_taxid": 83460, "relation_to_type": "type", "validated": true, "ani": 76.5102, "matched_fragments": 478, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella hybrida", "strain": "strain=DSM 14722", "accession": "GCA_020103775.1", "taxid": 394097, "species_taxid": 394097, "relation_to_type": "type", "validated": true, "ani": 76.5093, "matched_fragments": 472, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus aberystwythensis", "strain": "strain=AB050A", "accession": "GCA_003612165.1", "taxid": 2316722, "species_taxid": 2316722, "relation_to_type": "type", "validated": true, "ani": 76.4711, "matched_fragments": 460, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus terminator", "strain": "strain=CA054A", "accession": "GCA_003611635.1", "taxid": 2316733, "species_taxid": 2316733, "relation_to_type": "type", "validated": true, "ani": 76.4416, "matched_fragments": 444, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus interemptor", "strain": "strain=AB047A", "accession": "GCA_003668875.1", "taxid": 2316720, "species_taxid": 2316720, "relation_to_type": "type", "validated": true, "ani": 76.3826, "matched_fragments": 506, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 76.3762, "matched_fragments": 517, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus exercitus", "strain": "strain=AB043A", "accession": "GCA_003611585.1", "taxid": 2316736, "species_taxid": 2316736, "relation_to_type": "type", "validated": true, "ani": 76.3454, "matched_fragments": 504, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus carmarthensis", "strain": "strain=CA043D", "accession": "GCA_003611695.1", "taxid": 2316728, "species_taxid": 2316728, "relation_to_type": "type", "validated": true, "ani": 76.3392, "matched_fragments": 500, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus soli", "strain": "strain=ZKHCc1 1396", "accession": "GCA_014930455.1", "taxid": 2710757, "species_taxid": 2710757, "relation_to_type": "type", "validated": true, "ani": 76.3364, "matched_fragments": 512, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus fallax", "strain": "strain=DSM 14698", "accession": "GCA_012933655.1", "taxid": 394095, "species_taxid": 394095, "relation_to_type": "type", "validated": true, "ani": 76.3033, "matched_fragments": 643, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus sicarius", "strain": "strain=CA040B", "accession": "GCA_003611735.1", "taxid": 2316726, "species_taxid": 2316726, "relation_to_type": "type", "validated": true, "ani": 76.271, "matched_fragments": 502, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus eversor", "strain": "strain=AB053B", "accession": "GCA_010894455.1", "taxid": 2709661, "species_taxid": 2709661, "relation_to_type": "type", "validated": true, "ani": 76.1528, "matched_fragments": 529, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes piscinae", "strain": "strain=DSM 19946", "accession": "GCA_003258855.1", "taxid": 444923, "species_taxid": 444923, "relation_to_type": "type", "validated": true, "ani": 75.1108, "matched_fragments": 222, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lujinxingia vulgaris", "strain": "strain=TMQ4", "accession": "GCA_007997015.1", "taxid": 2600176, "species_taxid": 2600176, "relation_to_type": "type", "validated": true, "ani": 75.0945, "matched_fragments": 136, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=DSM 25623", "accession": "GCA_003814555.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 75.0822, "matched_fragments": 258, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=YIM 77520", "accession": "GCA_008033455.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 75.0683, "matched_fragments": 260, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas wenzhouensis", "strain": "strain=YD-1", "accession": "GCA_007859305.1", "taxid": 2599615, "species_taxid": 2599615, "relation_to_type": "type", "validated": true, "ani": 75.0662, "matched_fragments": 197, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=DSM 71", "accession": "GCA_002343915.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 75.0405, "matched_fragments": 681, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=ATCC 25963", "accession": "GCA_900112715.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 75.0286, "matched_fragments": 659, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas metalli", "strain": "strain=CF5-1", "accession": "GCA_000747155.1", "taxid": 948077, "species_taxid": 948077, "relation_to_type": "type", "validated": true, "ani": 74.9455, "matched_fragments": 187, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum anaerobium", "strain": "strain=LuFRes1", "accession": "GCA_012910705.2", "taxid": 182180, "species_taxid": 182180, "relation_to_type": "type", "validated": true, "ani": 74.8835, "matched_fragments": 152, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces dulcitolivorans", "strain": "strain=SJ-25", "accession": "GCA_003265355.1", "taxid": 2200759, "species_taxid": 2200759, "relation_to_type": "type", "validated": true, "ani": 74.8213, "matched_fragments": 256, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lehmannii", "strain": "strain=CECT 8763", "accession": "GCA_002245535.1", "taxid": 2048550, "species_taxid": 2048550, "relation_to_type": "type", "validated": true, "ani": 74.7977, "matched_fragments": 130, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces aurantiacus", "strain": "strain=DSM 14598", "accession": "GCA_016907355.1", "taxid": 165814, "species_taxid": 165814, "relation_to_type": "type", "validated": true, "ani": 74.7976, "matched_fragments": 257, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sindirgiensis", "strain": "strain=DSM 27082", "accession": "GCA_004331435.1", "taxid": 1124744, "species_taxid": 1124744, "relation_to_type": "type", "validated": true, "ani": 74.7973, "matched_fragments": 192, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis chromatogenes", "strain": "strain=YIM 90109", "accession": "GCA_000341185.1", "taxid": 280239, "species_taxid": 280239, "relation_to_type": "type", "validated": true, "ani": 74.7455, "matched_fragments": 260, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paragordonae", "strain": "strain=JCM 18565", "accession": "GCA_010723415.1", "taxid": 1389713, "species_taxid": 1389713, "relation_to_type": "type", "validated": true, "ani": 74.6961, "matched_fragments": 161, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paragordonae", "strain": "strain=49061", "accession": "GCA_003614435.1", "taxid": 1389713, "species_taxid": 1389713, "relation_to_type": "type", "validated": true, "ani": 74.6905, "matched_fragments": 165, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_014879945.1", "gtdb_species": "s__JAEUJQ01 sp014879945", "ani": 81.5786, "matched_fragments": 1275, "total_fragments": 2139, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__JAEUJQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016793095.1", "gtdb_species": "s__JAEUJQ01 sp016793095", "ani": 81.0233, "matched_fragments": 1305, "total_fragments": 2139, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__JAEUJQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016879935.1", "gtdb_species": "s__JAEUJQ01 sp016879935", "ani": 80.6869, "matched_fragments": 1244, "total_fragments": 2139, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__JAEUJQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903905455.1", "gtdb_species": "s__Archangium_A sp903905455", "ani": 78.2466, "matched_fragments": 933, "total_fragments": 2139, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Archangium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903911905.1", "gtdb_species": "s__FEN-1143 sp903911905", "ani": 77.9268, "matched_fragments": 732, "total_fragments": 2139, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__FEN-1143", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016792935.1", "gtdb_species": "s__Archangium_A sp016792935", "ani": 77.5286, "matched_fragments": 637, "total_fragments": 2139, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Archangium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003153055.1", "gtdb_species": "s__FEN-1143 sp003153055", "ani": 77.0821, "matched_fragments": 572, "total_fragments": 2139, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__FEN-1143", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.167, "cell_length": 0.56, "doubling_h": 0.602, "growth_tmp": 28.111, "optimum_tmp": 27.944, "optimum_ph": null, "genome_size": 9594622.373, "gc_content": 69.54, "coding_genes": 7504.597, "rRNA16S_genes": 3.5, "tRNA_genes": 67.777, "gram_stain": 0.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Myxococcota", "c__Myxococcia", "o__Myxococcales", "f__Myxococcaceae", "g__JAEUJQ01", "s__JAEUJQ01 sp020247085" ], "_genome_taxon": [ "Myxococcaceae", "bacterium", "d__Bacteria", "p__Myxococcota", "c__Myxococcia", "o__Myxococcales", "f__Myxococcaceae", "g__JAEUJQ01", "s__JAEUJQ01 sp020247085", "Bacteria", "Myxococcota", "Myxococcia", "Myxococcales", "Myxococcaceae", "JAEUJQ01", "JAEUJQ01", "sp020247085" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0001054", "label": "algal bloom" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }