{ "type": "genome", "identifier": "GCA_020249025.1", "organism": "Alphaproteobacteria bacterium", "title": "Alphaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Universite de Montreal", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020249025.1", "bioproject": "PRJNA662092", "biosample": "SAMN16074831", "wgs_master": "JADCGM000000000.1", "refseq_category": "na", "taxid": "1913988", "species_taxid": "1913988", "organism_name": "Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "M20BS1SP1A70MG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/04", "asm_name": "ASM2024902v1", "submitter": "Universite de Montreal", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/249/025/GCA_020249025.1_ASM2024902v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-04", "dateModified": "2021-10-04", "datePublished": "2021-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Alphaproteobacteria bacterium" ], "sample_taxid": [ "1913988" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil:Belo Horizonte,Pampulha Lake" ], "sample_host_location_id": [], "data_size": "0.599 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 76.89, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2211398", "Number of Sequences": "421", "Longest Sequences (bp)": "31948", "N50 (bp)": "5511", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.6", "Number of CDSs": "1819", "Average Protein Length": "285.3", "Coding Ratio (%)": "70.4", "Number of rRNAs": "0", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingosinicella ginsenosidimutans", "strain": "strain=BS-11", "accession": "GCA_007995055.1", "taxid": 1176539, "species_taxid": 1176539, "relation_to_type": "type", "validated": true, "ani": 78.225, "matched_fragments": 159, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas citri", "strain": "strain=RRHST34", "accession": "GCA_019429485.1", "taxid": 2862499, "species_taxid": 2862499, "relation_to_type": "type", "validated": true, "ani": 78.1303, "matched_fragments": 213, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas parva", "strain": "strain=17J27-24", "accession": "GCA_004564275.1", "taxid": 2555898, "species_taxid": 2555898, "relation_to_type": "type", "validated": true, "ani": 78.1235, "matched_fragments": 180, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas sanxanigenens", "strain": "strain=NX02", "accession": "GCA_000512205.2", "taxid": 397260, "species_taxid": 397260, "relation_to_type": "type", "validated": true, "ani": 78.112, "matched_fragments": 213, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas endophytica", "strain": "strain=DSM 101535", "accession": "GCA_014199415.1", "taxid": 869719, "species_taxid": 869719, "relation_to_type": "type", "validated": true, "ani": 78.0815, "matched_fragments": 193, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas gilva", "strain": "strain=ZDH117", "accession": "GCA_003515075.1", "taxid": 2305907, "species_taxid": 2305907, "relation_to_type": "type", "validated": true, "ani": 78.0614, "matched_fragments": 201, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas naasensis", "strain": "strain=KIS18-15", "accession": "GCA_004792695.1", "taxid": 1344951, "species_taxid": 1344951, "relation_to_type": "type", "validated": true, "ani": 78.0394, "matched_fragments": 195, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas naasensis", "strain": "strain=DSM 100060", "accession": "GCA_011762145.1", "taxid": 1344951, "species_taxid": 1344951, "relation_to_type": "type", "validated": true, "ani": 78.0303, "matched_fragments": 198, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tardibacter chloracetimidivorans", "strain": "strain=JJ-A5", "accession": "GCA_001890385.1", "taxid": 1921510, "species_taxid": 1921510, "relation_to_type": "type", "validated": true, "ani": 77.9637, "matched_fragments": 115, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas phyllosphaerae", "strain": "strain=FA2", "accession": "GCA_000427645.1", "taxid": 257003, "species_taxid": 257003, "relation_to_type": "type", "validated": true, "ani": 77.9232, "matched_fragments": 167, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas folli", "strain": "strain=RHCKR7", "accession": "GCA_019429525.1", "taxid": 2862497, "species_taxid": 2862497, "relation_to_type": "type", "validated": true, "ani": 77.8623, "matched_fragments": 228, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas cavernae", "strain": "strain=K2R01-6", "accession": "GCA_003590775.1", "taxid": 2320861, "species_taxid": 2320861, "relation_to_type": "type", "validated": true, "ani": 77.7966, "matched_fragments": 163, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas solaris", "strain": "strain=R4DWN", "accession": "GCA_007785815.1", "taxid": 2529389, "species_taxid": 2529389, "relation_to_type": "type", "validated": true, "ani": 77.762, "matched_fragments": 181, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas aracearum", "strain": "strain=WZY 27", "accession": "GCA_003345355.1", "taxid": 2283317, "species_taxid": 2283317, "relation_to_type": "type", "validated": true, "ani": 77.7524, "matched_fragments": 153, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas jatrophae", "strain": "strain=S5-249", "accession": "GCA_900113315.1", "taxid": 1166337, "species_taxid": 1166337, "relation_to_type": "type", "validated": true, "ani": 77.7237, "matched_fragments": 181, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hankyongella ginsenosidimutans", "strain": "strain=W1-2-3", "accession": "GCA_005144965.1", "taxid": 1763828, "species_taxid": 1763828, "relation_to_type": "type", "validated": true, "ani": 77.6594, "matched_fragments": 127, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polymorphobacter multimanifer", "strain": "strain=JCM 18140", "accession": "GCA_014647295.1", "taxid": 1070431, "species_taxid": 1070431, "relation_to_type": "type", "validated": true, "ani": 77.5968, "matched_fragments": 153, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polymorphobacter multimanifer", "strain": "strain=DSM 102189", "accession": "GCA_014205635.1", "taxid": 1070431, "species_taxid": 1070431, "relation_to_type": "type", "validated": true, "ani": 77.5527, "matched_fragments": 170, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium jiangsuense", "strain": "strain=DSM 26189", "accession": "GCA_014196495.1", "taxid": 870476, "species_taxid": 870476, "relation_to_type": "type", "validated": true, "ani": 77.5339, "matched_fragments": 182, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas flavalba", "strain": "strain=ZLT-5", "accession": "GCA_004796535.1", "taxid": 2559804, "species_taxid": 2559804, "relation_to_type": "type", "validated": true, "ani": 77.4603, "matched_fragments": 194, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas jejuensis", "strain": "strain=DSM 27651", "accession": "GCA_011927695.1", "taxid": 904715, "species_taxid": 904715, "relation_to_type": "type", "validated": true, "ani": 77.4405, "matched_fragments": 149, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas psychrotolerans", "strain": "strain=Cra20", "accession": "GCA_002796605.1", "taxid": 1327635, "species_taxid": 1327635, "relation_to_type": "type", "validated": true, "ani": 77.4136, "matched_fragments": 152, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pacificimonas flava", "strain": "strain=JLT2015", "accession": "GCA_000342165.1", "taxid": 1234595, "species_taxid": 1234595, "relation_to_type": "type", "validated": true, "ani": 77.2507, "matched_fragments": 104, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pacificimonas flava", "strain": "strain=DSM 107612", "accession": "GCA_014202205.1", "taxid": 1234595, "species_taxid": 1234595, "relation_to_type": "type", "validated": true, "ani": 77.1684, "matched_fragments": 103, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedomonas mirosovicensis", "strain": "strain=A1X5R2", "accession": "GCA_022569295.1", "taxid": 2908641, "species_taxid": 2908641, "relation_to_type": "type", "validated": true, "ani": 77.1035, "matched_fragments": 144, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 76.89, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018982925.1", "gtdb_species": "s__Glacieibacterium sp018982925", "ani": 78.555, "matched_fragments": 218, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Glacieibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000016765.1", "gtdb_species": "s__Rhizorhabdus wittichii", "ani": 78.4143, "matched_fragments": 260, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "98.46", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.82", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_019245455.1", "gtdb_species": "s__CAHJWT01 sp019245455", "ani": 78.3774, "matched_fragments": 185, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__CAHJWT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014197135.1", "gtdb_species": "s__Sphingomonas zeae", "ani": 78.1721, "matched_fragments": 156, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000512205.2", "gtdb_species": "s__Sphingomonas_D sanxanigenens", "ani": 78.1294, "matched_fragments": 212, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004681125.1", "gtdb_species": "s__Polymorphobacter_A arshaanensis", "ani": 78.0852, "matched_fragments": 205, "total_fragments": 525, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007785815.1", "gtdb_species": "s__Sphingomonas_G solaris", "ani": 77.7623, "matched_fragments": 181, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017745215.1", "gtdb_species": "s__Sphingomonas sp017745215", "ani": 77.7514, "matched_fragments": 207, "total_fragments": 525, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013344685.1", "gtdb_species": "s__Sphingomonas sp013344685", "ani": 77.7359, "matched_fragments": 204, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005144965.1", "gtdb_species": "s__Hankyongella ginsenosidimutans", "ani": 77.6594, "matched_fragments": 127, "total_fragments": 525, "gtdb_taxonomy": 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