{ "type": "genome", "identifier": "GCA_020249305.1", "organism": "Roseomonas sp.", "title": "Roseomonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Universite de Montreal", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020249305.1", "bioproject": "PRJNA662092", "biosample": "SAMN16074814", "wgs_master": "JADCFW000000000.1", "refseq_category": "na", "taxid": "1869190", "species_taxid": "1869190", "organism_name": "Roseomonas sp.", "infraspecific_name": "", "isolate": "M179S2SP10A20BQC", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/04", "asm_name": "ASM2024930v1", "submitter": "Universite de Montreal", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/249/305/GCA_020249305.1_ASM2024930v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-04", "dateModified": "2021-10-04", "datePublished": "2021-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseomonas sp." ], "sample_taxid": [ "1869190" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Quebec,Champlain Lake" ], "sample_host_location_id": [], "data_size": "1.126 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4039619", "Number of Sequences": "137", "Longest Sequences (bp)": "144853", "N50 (bp)": "50516", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.6", "Number of CDSs": "3883", "Average Protein Length": "308.6", "Coding Ratio (%)": "89.0", "Number of rRNAs": "1", "Number of tRNAs": "44", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseomonas rubea", "strain": "strain=MO17", "accession": "GCA_016106015.1", "taxid": 2748666, "species_taxid": 2748666, "relation_to_type": "type", "validated": true, "ani": 76.9471, "matched_fragments": 317, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas lacus", "strain": "strain=CGMCC 1.3617", "accession": "GCA_014644535.1", "taxid": 287609, "species_taxid": 287609, "relation_to_type": "type", "validated": true, "ani": 76.9161, "matched_fragments": 404, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas oryzicola", "strain": "strain=KCTC 22478", "accession": "GCA_012163135.1", "taxid": 535904, "species_taxid": 535904, "relation_to_type": "type", "validated": true, "ani": 76.8289, "matched_fragments": 338, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, "species_taxid": 1452450, "relation_to_type": "type", "validated": true, "ani": 76.7524, "matched_fragments": 332, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiroseomonas selenitidurans", "strain": "strain=BU-1", "accession": "GCA_012103215.1", "taxid": 2716335, "species_taxid": 2716335, "relation_to_type": "type", "validated": true, "ani": 76.6624, "matched_fragments": 291, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 76.5612, "matched_fragments": 251, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas hellenica", "strain": "strain=LMG 31523", "accession": "GCA_018129085.1", "taxid": 2687306, "species_taxid": 2687306, "relation_to_type": "type", "validated": true, "ani": 76.4962, "matched_fragments": 269, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas cervicalis", "strain": "strain=ATCC 49957", "accession": "GCA_000164635.1", "taxid": 204525, "species_taxid": 204525, "relation_to_type": "type", "validated": true, "ani": 76.4619, "matched_fragments": 227, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas arctica", "strain": "strain=LMG 28251", "accession": "GCA_018128965.1", "taxid": 1509237, "species_taxid": 1509237, "relation_to_type": "type", "validated": true, "ani": 76.3564, "matched_fragments": 219, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccirubricoccus deserti", "strain": "strain=SYSU D8009", "accession": "GCA_014283215.1", "taxid": 2013562, "species_taxid": 2013562, "relation_to_type": "type", "validated": true, "ani": 76.3484, "matched_fragments": 262, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccirubricoccus deserti", "strain": "strain=CGMCC 1.15936", "accession": "GCA_014644195.1", "taxid": 2013562, "species_taxid": 2013562, "relation_to_type": "type", "validated": true, "ani": 76.3457, "matched_fragments": 260, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas ludipueritiae", "strain": "strain=DSM 14915", "accession": "GCA_014490445.1", "taxid": 198093, "species_taxid": 198093, "relation_to_type": "type", "validated": true, "ani": 76.2924, "matched_fragments": 200, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas marmotae", "strain": "strain=1318", "accession": "GCA_017654485.1", "taxid": 2768161, "species_taxid": 2768161, "relation_to_type": "type", "validated": true, "ani": 76.271, "matched_fragments": 190, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas gilardii subsp. rosea", "strain": "strain=NCTC13290", "accession": "GCA_900455865.1", "taxid": 243956, "species_taxid": 257708, "relation_to_type": "type", "validated": true, "ani": 76.262, "matched_fragments": 141, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas gilardii subsp. rosea", "strain": "strain=ATCC BAA-691", "accession": "GCA_000518625.1", "taxid": 243956, "species_taxid": 257708, "relation_to_type": "type", "validated": true, "ani": 76.2058, "matched_fragments": 144, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas haemaphysalidis", "strain": "strain=546", "accession": "GCA_017355405.1", "taxid": 2768162, "species_taxid": 2768162, "relation_to_type": "type", "validated": true, "ani": 76.0949, "matched_fragments": 174, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rosea", "strain": "strain=DSM 14916", "accession": "GCA_900141905.1", "taxid": 198092, "species_taxid": 198092, "relation_to_type": "type", "validated": true, "ani": 76.0164, "matched_fragments": 172, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas mucosa", "strain": "strain=ATCC BAA-692", "accession": "GCA_000622225.1", "taxid": 207340, "species_taxid": 207340, "relation_to_type": "type", "validated": true, "ani": 75.9942, "matched_fragments": 161, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidisoma cellulosilyticum", "strain": "strain=HW T5.17", "accession": "GCA_020621385.1", "taxid": 2802395, "species_taxid": 2802395, "relation_to_type": "type", "validated": true, "ani": 75.9404, "matched_fragments": 96, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium iwatense", "strain": "strain=KCTC 23505", "accession": "GCA_021556475.1", "taxid": 768198, "species_taxid": 768198, "relation_to_type": "type", "validated": true, "ani": 75.719, "matched_fragments": 78, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidisoma silvae", "strain": "strain=HW T2.11", "accession": "GCA_020618775.1", "taxid": 2802396, "species_taxid": 2802396, "relation_to_type": "type", "validated": true, "ani": 75.6786, "matched_fragments": 114, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidibrevibacterium fodinaquatile", 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sp020249285" ], "_genome_taxon": [ "Roseomonas", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Acetobacterales", "f__Acetobacteraceae", "g__Neoroseomonas", "s__Neoroseomonas sp020249285", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Acetobacterales", "Acetobacteraceae", "Neoroseomonas", "Neoroseomonas", "sp020249285" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0001054", "label": "algal bloom" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }