{ "type": "genome", "identifier": "GCA_020249525.1", "organism": "Roseomonas sp.", "title": "Roseomonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Universite de Montreal", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020249525.1", "bioproject": "PRJNA662092", "biosample": "SAMN16074803", "wgs_master": "JADCFL000000000.1", "refseq_category": "na", "taxid": "1869190", "species_taxid": "1869190", "organism_name": "Roseomonas sp.", "infraspecific_name": "", "isolate": "M38BS1SP5A21MG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/04", "asm_name": "ASM2024952v1", "submitter": "Universite de Montreal", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/249/525/GCA_020249525.1_ASM2024952v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-04", "dateModified": "2021-10-04", "datePublished": "2021-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseomonas sp." ], "sample_taxid": [ "1869190" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil:Belo Horizonte,Pampulha Lake" ], "sample_host_location_id": [], "data_size": "1.213 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 76.26, "contamination": 5.73, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4368620", "Number of Sequences": "583", "Longest Sequences (bp)": "53659", "N50 (bp)": "10843", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.0", "Number of CDSs": "3741", "Average Protein Length": "302.5", "Coding Ratio (%)": "77.7", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, "species_taxid": 1452450, "relation_to_type": "type", "validated": true, "ani": 77.0049, "matched_fragments": 301, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rubea", "strain": "strain=MO17", "accession": "GCA_016106015.1", "taxid": 2748666, "species_taxid": 2748666, "relation_to_type": "type", "validated": true, "ani": 76.9556, "matched_fragments": 291, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas lacus", "strain": "strain=CGMCC 1.3617", "accession": "GCA_014644535.1", "taxid": 287609, "species_taxid": 287609, "relation_to_type": "type", "validated": true, "ani": 76.8004, "matched_fragments": 323, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiroseomonas tokyonensis", "strain": "strain=K-20", "accession": "GCA_019024325.1", "taxid": 430521, "species_taxid": 430521, "relation_to_type": "type", "validated": true, "ani": 76.7011, "matched_fragments": 251, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas oryzicola", "strain": "strain=KCTC 22478", "accession": "GCA_012163135.1", "taxid": 535904, "species_taxid": 535904, "relation_to_type": "type", "validated": true, "ani": 76.6947, "matched_fragments": 295, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 76.5798, "matched_fragments": 222, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas hellenica", "strain": "strain=LMG 31523", "accession": "GCA_018129085.1", "taxid": 2687306, "species_taxid": 2687306, "relation_to_type": "type", "validated": true, "ani": 76.5268, "matched_fragments": 251, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiroseomonas selenitidurans", "strain": "strain=BU-1", "accession": "GCA_012103215.1", "taxid": 2716335, "species_taxid": 2716335, "relation_to_type": "type", "validated": true, "ani": 76.4322, "matched_fragments": 269, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas wenyumeiae", "strain": "strain=Z23", "accession": "GCA_003696345.1", "taxid": 2478470, "species_taxid": 2478470, "relation_to_type": "type", "validated": true, "ani": 76.4125, "matched_fragments": 199, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus thiosulfatophilus", "strain": "strain=RB-3", "accession": "GCA_017311575.1", "taxid": 35813, "species_taxid": 35813, "relation_to_type": "type", "validated": true, "ani": 76.3845, "matched_fragments": 199, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas ludipueritiae", "strain": "strain=DSM 14915", "accession": "GCA_014490445.1", "taxid": 198093, "species_taxid": 198093, "relation_to_type": "type", "validated": true, "ani": 76.3617, "matched_fragments": 170, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belnapia mucosa", "strain": "strain=T6", "accession": "GCA_016775475.1", "taxid": 2804532, "species_taxid": 2804532, "relation_to_type": "type", "validated": true, "ani": 76.2847, "matched_fragments": 237, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas coralli", "strain": "strain=M0104", "accession": "GCA_009829925.1", "taxid": 2545983, "species_taxid": 2545983, "relation_to_type": "type", "validated": true, "ani": 76.2071, "matched_fragments": 153, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas marmotae", "strain": "strain=1318", "accession": "GCA_017654485.1", "taxid": 2768161, "species_taxid": 2768161, "relation_to_type": "type", "validated": true, "ani": 76.1713, "matched_fragments": 178, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus pinisoli", "strain": "strain=XZZS9", "accession": "GCA_018413645.1", "taxid": 2835040, "species_taxid": 2835040, "relation_to_type": "type", "validated": true, "ani": 76.1627, "matched_fragments": 152, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas haemaphysalidis", "strain": "strain=546", "accession": "GCA_017355405.1", "taxid": 2768162, "species_taxid": 2768162, "relation_to_type": "type", "validated": true, "ani": 76.0684, "matched_fragments": 159, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter swingsii", "strain": "strain=LMG 22125", "accession": "GCA_003207895.1", "taxid": 215220, "species_taxid": 215220, "relation_to_type": "type", "validated": true, "ani": 76.027, "matched_fragments": 60, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidocella aromatica", "strain": "strain=DSM 27026", "accession": "GCA_014201825.1", "taxid": 1303579, "species_taxid": 1303579, "relation_to_type": "type", "validated": true, "ani": 75.804, "matched_fragments": 67, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium temperatum", "strain": "strain=SDW018", "accession": "GCA_002284575.1", "taxid": 241416, "species_taxid": 241416, "relation_to_type": "type", "validated": true, "ani": 74.946, "matched_fragments": 51, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 76.26, "contamination": 5.73, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_016869735.1", "gtdb_species": "s__Roseomonas_B sp016869735", "ani": 87.2702, "matched_fragments": 782, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903927465.1", "gtdb_species": "s__Roseomonas_B sp903927465", "ani": 86.9991, "matched_fragments": 818, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.83", "min_intra_species_ani": "95.83", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016869715.1", "gtdb_species": "s__Roseomonas_B sp016869715", "ani": 86.5651, "matched_fragments": 807, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903844785.1", "gtdb_species": "s__Roseomonas_B sp903844785", "ani": 85.2108, "matched_fragments": 641, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014199195.1", "gtdb_species": "s__Roseomonas_B alkaliterrae", "ani": 77.0039, "matched_fragments": 301, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.89", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018129065.1", "gtdb_species": "s__Roseomonas_B soli", "ani": 76.8632, "matched_fragments": 290, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001464375.1", "gtdb_species": "s__Roseomonas_B sp001464375", "ani": 76.795, "matched_fragments": 326, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014644535.1", "gtdb_species": "s__Roseomonas_B lacus", "ani": 76.787, "matched_fragments": 325, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.121, "cell_length": 0.031, "doubling_h": null, "growth_tmp": 29.928, "optimum_tmp": 29.85, "optimum_ph": 7.031, "genome_size": 5614233.625, "gc_content": 66.545, "coding_genes": 4734.0, "rRNA16S_genes": 5.0, "tRNA_genes": 59.0, "gram_stain": 0.0, "sporulation": 0.25, "motility": 0.3, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.222, "coccus_cell_shape": 0.444, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.333, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Acetobacterales", "f__Acetobacteraceae", "g__Neoroseomonas", "s__Neoroseomonas sp020249775" ], "_genome_taxon": [ "Roseomonas", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Acetobacterales", "f__Acetobacteraceae", "g__Neoroseomonas", "s__Neoroseomonas sp020249775", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Acetobacterales", "Acetobacteraceae", "Neoroseomonas", "Neoroseomonas", "sp020249775" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0001054", "label": "algal bloom" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }