{ "type": "genome", "identifier": "GCA_020249775.1", "organism": "Roseomonas sp.", "title": "Roseomonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Universite de Montreal", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020249775.1", "bioproject": "PRJNA662092", "biosample": "SAMN16074790", "wgs_master": "JADCFA000000000.1", "refseq_category": "na", "taxid": "1869190", "species_taxid": "1869190", "organism_name": "Roseomonas sp.", "infraspecific_name": "", "isolate": "M039S1SP5A21QC", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/04", "asm_name": "ASM2024977v1", "submitter": "Universite de Montreal", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/249/775/GCA_020249775.1_ASM2024977v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-04", "dateModified": "2021-10-04", "datePublished": "2021-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseomonas sp." ], "sample_taxid": [ "1869190" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Quebec,Champlain Lake" ], "sample_host_location_id": [], "data_size": "1.126 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4067121", "Number of Sequences": "56", "Longest Sequences (bp)": "424559", "N50 (bp)": "210308", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.9", "Number of CDSs": "3858", "Average Protein Length": "318.8", "Coding Ratio (%)": "90.7", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseomonas lacus", "strain": "strain=CGMCC 1.3617", "accession": "GCA_014644535.1", "taxid": 287609, "species_taxid": 287609, "relation_to_type": "type", "validated": true, "ani": 77.1928, "matched_fragments": 411, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, "species_taxid": 1452450, "relation_to_type": "type", "validated": true, "ani": 77.1463, "matched_fragments": 393, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rhizosphaerae", "strain": "strain=YW11", "accession": "GCA_002631185.1", "taxid": 1335062, "species_taxid": 1335062, "relation_to_type": "type", "validated": true, "ani": 77.1286, "matched_fragments": 218, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rubea", "strain": "strain=MO17", "accession": "GCA_016106015.1", "taxid": 2748666, "species_taxid": 2748666, "relation_to_type": "type", "validated": true, "ani": 77.125, "matched_fragments": 359, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas oryzicola", "strain": "strain=KCTC 22478", "accession": "GCA_012163135.1", "taxid": 535904, "species_taxid": 535904, "relation_to_type": "type", "validated": true, "ani": 77.0048, "matched_fragments": 357, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 76.737, "matched_fragments": 263, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas hellenica", "strain": "strain=LMG 31523", "accession": "GCA_018129085.1", "taxid": 2687306, "species_taxid": 2687306, "relation_to_type": "type", "validated": true, "ani": 76.7336, "matched_fragments": 296, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius lipocyclicus", "strain": "strain=CCUG 44693", "accession": "GCA_009900765.1", "taxid": 268410, "species_taxid": 268410, "relation_to_type": "type", "validated": true, "ani": 76.6761, "matched_fragments": 245, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiroseomonas tokyonensis", "strain": "strain=K-20", "accession": "GCA_019024325.1", "taxid": 430521, "species_taxid": 430521, "relation_to_type": "type", "validated": true, "ani": 76.6655, "matched_fragments": 333, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas ludipueritiae", "strain": "strain=DSM 14915", "accession": "GCA_014490445.1", "taxid": 198093, "species_taxid": 198093, "relation_to_type": "type", "validated": true, "ani": 76.6092, "matched_fragments": 205, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccirubricoccus deserti", "strain": "strain=SYSU D8009", "accession": "GCA_014283215.1", "taxid": 2013562, "species_taxid": 2013562, "relation_to_type": "type", "validated": true, "ani": 76.5856, "matched_fragments": 280, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccirubricoccus deserti", "strain": "strain=CGMCC 1.15936", "accession": "GCA_014644195.1", "taxid": 2013562, "species_taxid": 2013562, "relation_to_type": "type", "validated": true, "ani": 76.5851, "matched_fragments": 280, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus thiosulfatophilus", "strain": "strain=RB-3", "accession": "GCA_017311575.1", "taxid": 35813, "species_taxid": 35813, "relation_to_type": "type", "validated": true, "ani": 76.5744, "matched_fragments": 252, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiroseomonas selenitidurans", "strain": "strain=BU-1", "accession": "GCA_012103215.1", "taxid": 2716335, "species_taxid": 2716335, "relation_to_type": "type", "validated": true, "ani": 76.5341, "matched_fragments": 330, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas wenyumeiae", "strain": "strain=Z23", "accession": "GCA_003696345.1", "taxid": 2478470, "species_taxid": 2478470, "relation_to_type": "type", "validated": true, "ani": 76.4856, "matched_fragments": 236, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiroseomonas frigidaquae", "strain": "strain=JCM 15073", "accession": "GCA_012163145.1", "taxid": 487318, "species_taxid": 487318, "relation_to_type": "type", "validated": true, "ani": 76.4829, "matched_fragments": 329, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus pinisoli", "strain": "strain=XZZS9", "accession": "GCA_018413645.1", "taxid": 2835040, "species_taxid": 2835040, "relation_to_type": "type", "validated": true, "ani": 76.3432, "matched_fragments": 178, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidocella facilis", "strain": "strain=ATCC 35904", "accession": "GCA_000687875.1", "taxid": 525, "species_taxid": 525, "relation_to_type": "type", "validated": true, "ani": 76.2829, "matched_fragments": 113, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas vastitatis", "strain": "strain=CPCC 101021", "accession": "GCA_003604215.1", "taxid": 2307076, "species_taxid": 2307076, "relation_to_type": "type", "validated": true, "ani": 76.2129, "matched_fragments": 208, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas haemaphysalidis", "strain": "strain=546", "accession": "GCA_017355405.1", "taxid": 2768162, "species_taxid": 2768162, "relation_to_type": "type", "validated": true, "ani": 76.1609, "matched_fragments": 195, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas harenae", "strain": "strain=CPCC 101081", "accession": "GCA_009848505.1", "taxid": 2692566, "species_taxid": 2692566, "relation_to_type": "type", "validated": true, "ani": 76.0351, "matched_fragments": 173, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium temperatum", "strain": "strain=SDW018", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Acetobacterales", "f__Acetobacteraceae", "g__Neoroseomonas", "s__Neoroseomonas sp020249775" ], "_genome_taxon": [ "Roseomonas", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Acetobacterales", "f__Acetobacteraceae", "g__Neoroseomonas", "s__Neoroseomonas sp020249775", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Acetobacterales", "Acetobacteraceae", "Neoroseomonas", "Neoroseomonas", "sp020249775" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0001054", "label": "algal bloom" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }