{ "type": "genome", "identifier": "GCA_020249825.1", "organism": "Roseomonas sp.", "title": "Roseomonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Universite de Montreal", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020249825.1", "bioproject": "PRJNA662092", "biosample": "SAMN16074787", "wgs_master": "JADCEX000000000.1", "refseq_category": "na", "taxid": "1869190", "species_taxid": "1869190", "organism_name": "Roseomonas sp.", "infraspecific_name": "", "isolate": "M025S2SP4A27QC", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/04", "asm_name": "ASM2024982v1", "submitter": "Universite de Montreal", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/249/825/GCA_020249825.1_ASM2024982v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-04", "dateModified": "2021-10-04", "datePublished": "2021-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseomonas sp." ], "sample_taxid": [ "1869190" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Quebec,Champlain Lake" ], "sample_host_location_id": [], "data_size": "1.158 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 93.13, "contamination": 8.33, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4174680", "Number of Sequences": "420", "Longest Sequences (bp)": "69456", "N50 (bp)": "14678", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.0", "Number of CDSs": "3767", "Average Protein Length": "303.9", "Coding Ratio (%)": "82.3", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseomonas lacus", "strain": "strain=CGMCC 1.3617", "accession": "GCA_014644535.1", "taxid": 287609, "species_taxid": 287609, "relation_to_type": "type", "validated": true, "ani": 77.0436, "matched_fragments": 344, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rubea", "strain": "strain=MO17", "accession": "GCA_016106015.1", "taxid": 2748666, "species_taxid": 2748666, "relation_to_type": "type", "validated": true, "ani": 77.0379, "matched_fragments": 319, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, "species_taxid": 1452450, "relation_to_type": "type", "validated": true, "ani": 76.901, "matched_fragments": 330, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas oryzicola", "strain": "strain=KCTC 22478", "accession": "GCA_012163135.1", "taxid": 535904, "species_taxid": 535904, "relation_to_type": "type", "validated": true, "ani": 76.8906, "matched_fragments": 323, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas marmotae", "strain": "strain=1318", "accession": "GCA_017654485.1", "taxid": 2768161, "species_taxid": 2768161, "relation_to_type": "type", "validated": true, "ani": 76.633, "matched_fragments": 157, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas oryzae", "strain": "strain=KCTC 42542", "accession": "GCA_008386565.1", "taxid": 1608942, "species_taxid": 1608942, "relation_to_type": "type", "validated": true, "ani": 76.6011, "matched_fragments": 185, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas hellenica", "strain": "strain=LMG 31523", "accession": "GCA_018129085.1", "taxid": 2687306, "species_taxid": 2687306, "relation_to_type": "type", "validated": true, "ani": 76.522, "matched_fragments": 282, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiroseomonas tokyonensis", "strain": "strain=K-20", "accession": "GCA_019024325.1", "taxid": 430521, "species_taxid": 430521, "relation_to_type": "type", "validated": true, "ani": 76.5182, "matched_fragments": 325, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiroseomonas selenitidurans", "strain": "strain=BU-1", "accession": "GCA_012103215.1", "taxid": 2716335, "species_taxid": 2716335, "relation_to_type": "type", "validated": true, "ani": 76.4755, "matched_fragments": 301, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas arctica", "strain": "strain=LMG 28251", "accession": "GCA_018128965.1", "taxid": 1509237, "species_taxid": 1509237, "relation_to_type": "type", "validated": true, "ani": 76.425, "matched_fragments": 201, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus thiosulfatophilus", "strain": "strain=RB-3", "accession": "GCA_017311575.1", "taxid": 35813, "species_taxid": 35813, "relation_to_type": "type", "validated": true, "ani": 76.4191, "matched_fragments": 224, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas coralli", "strain": "strain=M0104", "accession": "GCA_009829925.1", "taxid": 2545983, "species_taxid": 2545983, "relation_to_type": "type", "validated": true, "ani": 76.3927, "matched_fragments": 169, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas ludipueritiae", "strain": "strain=DSM 14915", "accession": "GCA_014490445.1", "taxid": 198093, "species_taxid": 198093, "relation_to_type": "type", "validated": true, "ani": 76.367, "matched_fragments": 196, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccirubricoccus deserti", "strain": "strain=CGMCC 1.15936", "accession": "GCA_014644195.1", "taxid": 2013562, "species_taxid": 2013562, "relation_to_type": "type", "validated": true, "ani": 76.3443, "matched_fragments": 265, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccirubricoccus deserti", "strain": "strain=SYSU D8009", "accession": "GCA_014283215.1", "taxid": 2013562, "species_taxid": 2013562, "relation_to_type": "type", "validated": true, "ani": 76.3339, "matched_fragments": 270, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas wenyumeiae", "strain": "strain=Z23", "accession": "GCA_003696345.1", "taxid": 2478470, "species_taxid": 2478470, "relation_to_type": "type", "validated": true, "ani": 76.3244, "matched_fragments": 211, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rosea", "strain": "strain=DSM 14916", "accession": "GCA_900141905.1", "taxid": 198092, "species_taxid": 198092, "relation_to_type": "type", "validated": true, "ani": 76.2903, "matched_fragments": 146, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas harenae", "strain": "strain=CPCC 101081", "accession": "GCA_009848505.1", "taxid": 2692566, "species_taxid": 2692566, "relation_to_type": "type", "validated": true, "ani": 76.2379, "matched_fragments": 147, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas gilardii subsp. rosea", "strain": "strain=NCTC13290", "accession": "GCA_900455865.1", "taxid": 243956, "species_taxid": 257708, "relation_to_type": "type", "validated": true, "ani": 76.0717, "matched_fragments": 146, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas deserti", "strain": "strain=M3", "accession": "GCA_001982615.1", "taxid": 1817963, "species_taxid": 1817963, "relation_to_type": "type", "validated": true, "ani": 76.0605, "matched_fragments": 191, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas mucosa", "strain": "strain=ATCC BAA-692", "accession": "GCA_000622225.1", "taxid": 207340, "species_taxid": 207340, "relation_to_type": "type", "validated": true, "ani": 76.05, "matched_fragments": 148, "total_fragments": 1174, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas gilardii subsp. rosea", "strain": "strain=ATCC BAA-691", "accession": "GCA_000518625.1", "taxid": 243956, 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"Acetobacteraceae", "Neoroseomonas", "Neoroseomonas", "sp020249825" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0001054", "label": "algal bloom" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }