{ "type": "genome", "identifier": "GCA_020252705.1", "organism": "Methylobacterium sp.", "title": "Methylobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Universite de Montreal", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020252705.1", "bioproject": "PRJNA662092", "biosample": "SAMN16074722", "wgs_master": "JADCCM000000000.1", "refseq_category": "na", "taxid": "409", "species_taxid": "409", "organism_name": "Methylobacterium sp.", "infraspecific_name": "", "isolate": "M038S1SP3A31QC", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/04", "asm_name": "ASM2025270v1", "submitter": "Universite de Montreal", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/252/705/GCA_020252705.1_ASM2025270v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-04", "dateModified": "2021-10-04", "datePublished": "2021-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium sp." ], "sample_taxid": [ "409" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Quebec,Champlain Lake" ], "sample_host_location_id": [], "data_size": "0.828 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3009154", "Number of Sequences": "37", "Longest Sequences (bp)": "333978", "N50 (bp)": "103792", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.4", "Number of CDSs": "2853", "Average Protein Length": "316.5", "Coding Ratio (%)": "90.0", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdaerophilum calidifontis", "strain": "strain=SYSU G02060", "accession": "GCA_008641065.1", "taxid": 2604328, "species_taxid": 2604328, "relation_to_type": "type", "validated": true, "ani": 79.6586, "matched_fragments": 519, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga flocculans", "strain": "strain=ATCC BAA-817", "accession": "GCA_000518665.1", "taxid": 217168, "species_taxid": 217168, "relation_to_type": "type", "validated": true, "ani": 78.0566, "matched_fragments": 228, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea robiniae", "strain": "strain=DSM 26672", "accession": "GCA_900102525.1", 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"below_threshold" }, { "organism_name": "Salinarimonas ramus", "strain": "strain=CGMCC 1.9161", "accession": "GCA_014645695.1", "taxid": 690164, "species_taxid": 690164, "relation_to_type": "type", "validated": true, "ani": 77.1877, "matched_fragments": 269, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinarimonas rosea", "strain": "strain=DSM 21201", "accession": "GCA_000429045.1", "taxid": 552063, "species_taxid": 552063, "relation_to_type": "type", "validated": true, "ani": 77.1619, "matched_fragments": 246, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tarhaniae", "strain": "strain=DSM 25844", "accession": "GCA_001043955.1", "taxid": 1187852, "species_taxid": 1187852, "relation_to_type": "type", "validated": true, "ani": 77.1274, "matched_fragments": 251, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"Rhabdaerophilum", "Rhabdaerophilum", "sp020252645" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0001054", "label": "algal bloom" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }