{
    "type": "genome",
    "identifier": "GCA_020285445.1",
    "organism": "Cytophagales bacterium",
    "title": "Cytophagales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Universite de Montreal",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020285445.1",
        "bioproject": "PRJNA507251",
        "biosample": "SAMN16074621",
        "wgs_master": "JADCJO000000000.1",
        "refseq_category": "na",
        "taxid": "2053541",
        "species_taxid": "2053541",
        "organism_name": "Cytophagales bacterium",
        "infraspecific_name": "",
        "isolate": "M002S1SP2A05QC",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/05",
        "asm_name": "ASM2028544v1",
        "submitter": "Universite de Montreal",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/285/445/GCA_020285445.1_ASM2028544v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-05",
    "dateModified": "2021-10-05",
    "datePublished": "2021-10-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cytophagales bacterium"
        ],
        "sample_taxid": [
            "2053541"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Quebec, Champlain Lake"
        ],
        "sample_host_location_id": [],
        "data_size": "1.156 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4031368",
        "Number of Sequences": "91",
        "Longest Sequences (bp)": "188336",
        "N50 (bp)": "81859",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.9",
        "Number of CDSs": "3680",
        "Average Protein Length": "323.5",
        "Coding Ratio (%)": "88.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Chryseotalea sanaruensis",
                "strain": "strain=Ys",
                "accession": "GCA_003990915.1",
                "taxid": 2482724,
                "species_taxid": 2482724,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5344,
                "matched_fragments": 53,
                "total_fragments": 1297,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013140395.1",
                "gtdb_species": "s__ELB16-189 sp013140395",
                "ani": 88.4659,
                "matched_fragments": 551,
                "total_fragments": 1297,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013298505.1",
                "gtdb_species": "s__ELB16-189 sp013298505",
                "ani": 78.6112,
                "matched_fragments": 260,
                "total_fragments": 1297,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018267275.1",
                "gtdb_species": "s__ELB16-189 sp018267275",
                "ani": 78.2046,
                "matched_fragments": 152,
                "total_fragments": 1297,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016191555.1",
                "gtdb_species": "s__ELB16-189 sp016191555",
                "ani": 77.1608,
                "matched_fragments": 168,
                "total_fragments": 1297,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013140555.1",
                "gtdb_species": "s__ELB16-189 sp013140555",
                "ani": 77.0623,
                "matched_fragments": 174,
                "total_fragments": 1297,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002398365.1",
                "gtdb_species": "s__ELB16-189 sp002398365",
                "ani": 76.9112,
                "matched_fragments": 217,
                "total_fragments": 1297,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013414665.1",
                "gtdb_species": "s__ELB16-189 sp013414665",
                "ani": 76.0813,
                "matched_fragments": 88,
                "total_fragments": 1297,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018266435.1",
                "gtdb_species": "s__ELB16-189 sp018266435",
                "ani": 76.0483,
                "matched_fragments": 70,
                "total_fragments": 1297,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_015472025.1",
                "gtdb_species": "s__ELB16-189 sp015472025",
                "ani": 76.0209,
                "matched_fragments": 63,
                "total_fragments": 1297,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018267285.1",
                "gtdb_species": "s__ELB16-189 sp018267285",
                "ani": 75.9286,
                "matched_fragments": 65,
                "total_fragments": 1297,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001567185.1",
                "gtdb_species": "s__ELB16-189 sp001567185",
                "ani": 75.8249,
                "matched_fragments": 88,
                "total_fragments": 1297,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.67",
                "min_intra_species_ani": "98.67",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018267215.1",
                "gtdb_species": "s__ELB16-189 sp018267215",
                "ani": 75.75,
                "matched_fragments": 71,
                "total_fragments": 1297,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018266055.1",
                "gtdb_species": "s__ELB16-189 sp018266055",
                "ani": 75.6806,
                "matched_fragments": 76,
                "total_fragments": 1297,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003990915.1",
                "gtdb_species": "s__Chryseotalea sanaruensis",
                "ani": 75.5524,
                "matched_fragments": 52,
                "total_fragments": 1297,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Chryseotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.291,
        "cell_length": 0.395,
        "doubling_h": -0.018,
        "growth_tmp": 28.322,
        "optimum_tmp": 28.798,
        "optimum_ph": 7.4,
        "genome_size": 5502654.716,
        "gc_content": 45.15,
        "coding_genes": 4297.673,
        "rRNA16S_genes": 3.19,
        "tRNA_genes": 41.5,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.218,
        "range_salinity": 1.0,
        "facultative_respiration": 0.03,
        "anaerobic_respiration": 0.006,
        "aerobic_respiration": 0.963,
        "mesophilic_range_tmp": 0.913,
        "thermophilic_range_tmp": 0.043,
        "psychrophilic_range_tmp": 0.043,
        "bacillus_cell_shape": 0.969,
        "coccus_cell_shape": 0.015,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.007,
        "spiral_cell_shape": 0.007
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Cytophagales",
        "f__Cyclobacteriaceae",
        "g__ELB16-189",
        "s__ELB16-189 sp020402945"
    ],
    "_genome_taxon": [
        "Cytophagales",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Cytophagales",
        "f__Cyclobacteriaceae",
        "g__ELB16-189",
        "s__ELB16-189 sp020402945",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Cytophagales",
        "Cyclobacteriaceae",
        "ELB16-189",
        "ELB16-189",
        "sp020402945"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0001054",
            "label": "algal bloom"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}