{
    "type": "genome",
    "identifier": "GCA_020328045.1",
    "organism": "Endomicrobium sp.",
    "title": "Endomicrobium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Connecticut",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020328045.1",
        "bioproject": "PRJNA644342",
        "biosample": "SAMN21555665",
        "wgs_master": "JAIXMY000000000.1",
        "refseq_category": "na",
        "taxid": "2027285",
        "species_taxid": "2027285",
        "organism_name": "Endomicrobium sp.",
        "infraspecific_name": "",
        "isolate": "PV1",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/06",
        "asm_name": "ASM2032804v1",
        "submitter": "University of Connecticut",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/328/045/GCA_020328045.1_ASM2032804v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-06",
    "dateModified": "2021-10-06",
    "datePublished": "2021-10-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Endomicrobium sp."
        ],
        "sample_taxid": [
            "2027285"
        ],
        "sample_host_organism": [
            "Pyrsonympha vertens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Connecticut"
        ],
        "sample_host_location_id": [],
        "data_size": "0.352 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 1.39,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1252079",
        "Number of Sequences": "122",
        "Longest Sequences (bp)": "42587",
        "N50 (bp)": "15461",
        "Gap Ratio (%)": "0.009664",
        "GCcontent (%)": "35.3",
        "Number of CDSs": "1222",
        "Average Protein Length": "259.3",
        "Coding Ratio (%)": "75.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Endomicrobium proavitum",
                "strain": "strain=Rsa215",
                "accession": "GCA_001027545.1",
                "taxid": 1408281,
                "species_taxid": 1408281,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1991,
                "matched_fragments": 59,
                "total_fragments": 357,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 1.39,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002355835.1",
                "gtdb_species": "s__Endomicrobium_A trichonymphae",
                "ani": 77.5089,
                "matched_fragments": 123,
                "total_fragments": 357,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__Endomicrobium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.00",
                "min_intra_species_ani": "99.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001027545.1",
                "gtdb_species": "s__Endomicrobium proavitum",
                "ani": 77.1991,
                "matched_fragments": 59,
                "total_fragments": 357,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__Endomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009781315.1",
                "gtdb_species": "s__Endomicrobium sp009781315",
                "ani": 75.8713,
                "matched_fragments": 54,
                "total_fragments": 357,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__Endomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 1359909.6,
        "gc_content": 37.293,
        "coding_genes": 1120.416,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Elusimicrobiota",
        "c__Endomicrobiia",
        "o__Endomicrobiales",
        "f__Endomicrobiaceae",
        "g__Endomicrobium_A",
        "s__Endomicrobium_A sp020328045"
    ],
    "_genome_taxon": [
        "Endomicrobium",
        "sp.",
        "d__Bacteria",
        "p__Elusimicrobiota",
        "c__Endomicrobiia",
        "o__Endomicrobiales",
        "f__Endomicrobiaceae",
        "g__Endomicrobium_A",
        "s__Endomicrobium_A sp020328045",
        "Bacteria",
        "Elusimicrobiota",
        "Endomicrobiia",
        "Endomicrobiales",
        "Endomicrobiaceae",
        "Endomicrobium",
        "A",
        "Endomicrobium",
        "A",
        "sp020328045"
    ],
    "_meo": [
        {
            "id": "MEO_0000470",
            "label": "hindgut"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}