{ "type": "genome", "identifier": "GCA_020348325.1", "organism": "Phycisphaerales bacterium", "title": "Phycisphaerales bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Tongji University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020348325.1", "bioproject": "PRJNA575161", "biosample": "SAMN17669618", "wgs_master": "", "refseq_category": "na", "taxid": "2052180", "species_taxid": "2052180", "organism_name": "Phycisphaerales bacterium", "infraspecific_name": "", "isolate": "bin358", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/07", "asm_name": "ASM2034832v1", "submitter": "Tongji University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/348/325/GCA_020348325.1_ASM2034832v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-07", "dateModified": "2021-10-07", "datePublished": "2021-10-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Phycisphaerales bacterium" ], "sample_taxid": [ "2052180" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:PRE" ], "sample_host_location_id": [], "data_size": "1.481 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 72.22, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5278881", "Number of Sequences": "1", "Longest Sequences (bp)": "5278881", "N50 (bp)": "5278881", "Gap Ratio (%)": "2.771421", "GCcontent (%)": "53.8", "Number of CDSs": "3965", "Average Protein Length": "343.8", "Coding Ratio (%)": "77.5", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 72.22, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016782865.1", "gtdb_species": "s__SG8-4 sp016782865", "ani": 78.9904, "matched_fragments": 672, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__SG8-4;g__SG8-4", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001303465.1", "gtdb_species": "s__SG8-4 sp001303465", "ani": 78.848, "matched_fragments": 478, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__SG8-4;g__SG8-4", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005223045.1", "gtdb_species": "s__SG8-4 sp005223045", "ani": 77.3455, "matched_fragments": 474, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__SG8-4;g__SG8-4", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013202635.1", "gtdb_species": "s__NIOZ-UU13 sp013202635", "ani": 76.1546, "matched_fragments": 82, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__SG8-4;g__NIOZ-UU13", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016934255.1", "gtdb_species": "s__JAFGPJ01 sp016934255", "ani": 76.1102, "matched_fragments": 161, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__SG8-4;g__JAFGPJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001603075.1", "gtdb_species": "s__PLanc-01 sp001603075", "ani": 75.6213, "matched_fragments": 89, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__SG8-4;g__PLanc-01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012719085.1", "gtdb_species": "s__PLanc-01 sp012719085", "ani": 75.6172, "matched_fragments": 66, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__SG8-4;g__PLanc-01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016932895.1", "gtdb_species": "s__PLanc-01 sp016932895", "ani": 75.4815, "matched_fragments": 129, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__SG8-4;g__PLanc-01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002327785.1", "gtdb_species": "s__PLanc-01 sp002327785", "ani": 75.4311, "matched_fragments": 88, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__SG8-4;g__PLanc-01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": 25.0, "optimum_ph": null, "genome_size": 3884381.5, "gc_content": 72.147, "coding_genes": 3146.0, "rRNA16S_genes": 1.0, "tRNA_genes": 46.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Planctomycetota", "c__Phycisphaerae", "o__Sedimentisphaerales", "f__SG8-4", "g__SG8-4", "s__" ], "_genome_taxon": [ "Phycisphaerales", "bacterium", "d__Bacteria", "p__Planctomycetota", "c__Phycisphaerae", "o__Sedimentisphaerales", "f__SG8-4", "g__SG8-4", "s__", "Bacteria", "Planctomycetota", "Phycisphaerae", "Sedimentisphaerales", "SG8-4", "SG8-4", "s", "", "" ], "_meo": [ { "id": "MEO_0000066", "label": "sediment" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }