{ "type": "genome", "identifier": "GCA_020348765.1", "organism": "Burkholderiales bacterium", "title": "Burkholderiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Tongji University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020348765.1", "bioproject": "PRJNA575161", "biosample": "SAMN17669612", "wgs_master": "", "refseq_category": "na", "taxid": "1891238", "species_taxid": "1891238", "organism_name": "Burkholderiales bacterium", "infraspecific_name": "", "isolate": "bin300", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/07", "asm_name": "ASM2034876v1", "submitter": "Tongji University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/348/765/GCA_020348765.1_ASM2034876v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-07", "dateModified": "2021-10-07", "datePublished": "2021-10-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiales bacterium" ], "sample_taxid": [ "1891238" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:PRE" ], "sample_host_location_id": [], "data_size": "0.798 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 46.4, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3024872", "Number of Sequences": "1", "Longest Sequences (bp)": "3024872", "N50 (bp)": "3024872", "Gap Ratio (%)": "1.861236", "GCcontent (%)": "69.9", "Number of CDSs": "2772", "Average Protein Length": "314.1", "Coding Ratio (%)": "86.4", "Number of rRNAs": "0", "Number of tRNAs": "19", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Massilia terrae", "strain": "strain=JCM 31606", "accession": "GCA_024753145.1", "taxid": 1811224, "species_taxid": 1811224, "relation_to_type": "type", "validated": true, "ani": 76.2479, "matched_fragments": 196, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus alkaliphilus", "strain": "strain=ASC-732", "accession": "GCA_900094595.1", "taxid": 942866, "species_taxid": 942866, "relation_to_type": "type", "validated": true, "ani": 76.2099, "matched_fragments": 295, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea nosoerga", "strain": "strain=LMG 31109", "accession": "GCA_902459585.1", "taxid": 2508296, "species_taxid": 2508296, "relation_to_type": "type", "validated": true, "ani": 76.0472, "matched_fragments": 154, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus sulfidivorans", "strain": "strain=D-501", "accession": "GCA_013426975.1", "taxid": 639200, "species_taxid": 639200, "relation_to_type": "type", "validated": true, "ani": 76.0083, "matched_fragments": 272, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verticiella sediminum", "strain": "strain=DSM 27279", "accession": "GCA_007558815.1", "taxid": 1247510, "species_taxid": 1247510, "relation_to_type": "type", "validated": true, "ani": 75.9813, "matched_fragments": 225, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia norwichensis", "strain": "strain=LMG 28164", "accession": "GCA_024753245.1", "taxid": 1442366, "species_taxid": 1442366, "relation_to_type": "type", "validated": true, "ani": 75.9754, "matched_fragments": 224, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Castellaniella defragrans", "strain": "strain=DSM 12141", "accession": "GCA_014203015.1", "taxid": 75697, "species_taxid": 75697, "relation_to_type": "type", "validated": true, "ani": 75.8974, "matched_fragments": 181, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus natans", "strain": "strain=ATCC 13338", "accession": "GCA_900156335.1", "taxid": 34103, "species_taxid": 34103, "relation_to_type": "type", "validated": true, "ani": 75.8818, "matched_fragments": 281, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus natans subsp. natans", "strain": "strain=DSM 6575", "accession": "GCA_000689195.1", "taxid": 882627, "species_taxid": 34103, "relation_to_type": "type", "validated": true, "ani": 75.8779, "matched_fragments": 274, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pickettii", "strain": "strain=FDAARGOS_1535", "accession": "GCA_020341455.1", "taxid": 329, "species_taxid": 329, "relation_to_type": "type", "validated": true, "ani": 75.8768, "matched_fragments": 107, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia oculi", "strain": "strain=CCUG 43427", "accession": "GCA_003143515.1", "taxid": 945844, "species_taxid": 945844, "relation_to_type": "type", "validated": true, "ani": 75.857, "matched_fragments": 230, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pickettii", "strain": "strain=ATCC 27511", "accession": "GCA_000743455.1", "taxid": 329, "species_taxid": 329, "relation_to_type": "type", "validated": true, "ani": 75.8533, "matched_fragments": 109, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Castellaniella defragrans", "strain": "strain=CCUG 39790", "accession": "GCA_008801975.1", "taxid": 75697, "species_taxid": 75697, "relation_to_type": "type", "validated": true, "ani": 75.833, "matched_fragments": 182, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia ptereochthonis", "strain": "", "accession": "GCA_001545075.2", "taxid": 1777144, "species_taxid": 1777144, "relation_to_type": "type", "validated": true, "ani": 75.7737, "matched_fragments": 194, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus numazuensis", "strain": "strain=LMG 26411", "accession": "GCA_905397435.1", "taxid": 221992, "species_taxid": 221992, "relation_to_type": "type", "validated": true, "ani": 75.7701, "matched_fragments": 236, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia plantarii", "strain": "strain=ATCC 43733", "accession": "GCA_001411805.1", "taxid": 41899, "species_taxid": 41899, "relation_to_type": "type", "validated": true, "ani": 75.7333, "matched_fragments": 379, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus pauculus", "strain": "strain=FDAARGOS_1472", "accession": "GCA_019931045.1", "taxid": 82633, "species_taxid": 82633, "relation_to_type": "type", "validated": true, "ani": 75.7178, "matched_fragments": 181, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus pauculus", "strain": "strain=CCUG 12507", "accession": "GCA_008801835.1", "taxid": 82633, "species_taxid": 82633, "relation_to_type": "type", "validated": true, "ani": 75.7167, "matched_fragments": 181, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 75.7159, "matched_fragments": 357, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia plantarii", "strain": "strain=LMG 9035", "accession": "GCA_902832905.1", "taxid": 41899, "species_taxid": 41899, "relation_to_type": "type", "validated": true, "ani": 75.7147, "matched_fragments": 381, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia mallei", "strain": "strain=ATCC 23344", "accession": "GCA_000011705.1", "taxid": 13373, "species_taxid": 13373, "relation_to_type": "type", "validated": true, "ani": 75.6306, "matched_fragments": 279, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella parapertussis", "strain": "strain=FDAARGOS_1541", "accession": "GCA_020735925.1", "taxid": 519, 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