{ "type": "genome", "identifier": "GCA_020404425.1", "organism": "Rickettsia endosymbiont of Pyrocoelia pectoralis", "title": "Rickettsia endosymbiont of Pyrocoelia pectoralis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Liverpool", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020404425.1", "bioproject": "PRJNA767332", "biosample": "SAMN21822551", "wgs_master": "DYDX00000000.1", "refseq_category": "na", "taxid": "2866165", "species_taxid": "2866165", "organism_name": "Rickettsia endosymbiont of Pyrocoelia pectoralis", "infraspecific_name": "", "isolate": "Ppec13", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/09", "asm_name": "ASM2040442v1", "submitter": "University of Liverpool", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/404/425/GCA_020404425.1_ASM2040442v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-09", "dateModified": "2021-10-09", "datePublished": "2021-10-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Rickettsia endosymbiont of Pyrocoelia pectoralis" ], "sample_taxid": [ "2866165" ], "sample_host_organism": [ "Pyrocoelia pectoralis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xianjian Village, Hongshan District, Wuhan city, Hubei Province" ], "sample_host_location_id": [], "data_size": "0.400 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1426047", "Number of Sequences": "90", "Longest Sequences (bp)": "65446", "N50 (bp)": "26987", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.6", "Number of CDSs": "1317", "Average Protein Length": "296.7", "Coding Ratio (%)": "82.2", "Number of rRNAs": "5", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rickettsia tillamookensis", "strain": "strain=Tillamook 23", "accession": "GCA_016743795.1", "taxid": 2761623, "species_taxid": 2761623, "relation_to_type": "type", "validated": true, "ani": 81.3175, "matched_fragments": 300, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia asembonensis", "strain": "strain=NMRCii", "accession": "GCA_000828125.2", "taxid": 1068590, "species_taxid": 1068590, "relation_to_type": "type", "validated": true, "ani": 81.1889, "matched_fragments": 285, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia hoogstraalii", "strain": "strain=Croatica", "accession": "GCA_000825685.1", "taxid": 467174, "species_taxid": 467174, "relation_to_type": "type", "validated": true, "ani": 81.1527, "matched_fragments": 302, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia tamurae", "strain": "strain=AT-1", "accession": "GCA_000751075.1", "taxid": 334545, "species_taxid": 334545, "relation_to_type": "type", "validated": true, "ani": 80.9324, "matched_fragments": 291, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia tamurae subsp. buchneri", "strain": "strain=ISO7", "accession": "GCA_000696365.2", "taxid": 1462938, "species_taxid": 334545, "relation_to_type": "type", "validated": true, "ani": 80.8806, "matched_fragments": 239, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia gravesii", "strain": "strain=BWI-1", "accession": "GCA_000485845.1", "taxid": 354585, "species_taxid": 354585, "relation_to_type": "type", "validated": true, "ani": 80.5728, "matched_fragments": 285, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia conorii subsp. raoultii", "strain": "strain=Khabarovsk", "accession": "GCA_000940955.1", "taxid": 369822, "species_taxid": 781, "relation_to_type": "type", "validated": true, "ani": 80.5698, "matched_fragments": 293, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia australis", "strain": "strain=Phillips", "accession": "GCA_000273745.1", "taxid": 787, "species_taxid": 787, "relation_to_type": "type", "validated": true, "ani": 80.5549, "matched_fragments": 277, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia rhipicephali", "strain": "strain=3-7-female6-CWPP", "accession": "GCA_000284075.1", "taxid": 33992, "species_taxid": 33992, "relation_to_type": "type", "validated": true, "ani": 80.5312, "matched_fragments": 290, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia rickettsii", "strain": "strain=Iowa", "accession": "GCA_001950995.1", "taxid": 783, "species_taxid": 783, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3873, "matched_fragments": 290, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia conorii subsp. caspia", "strain": "strain=A-167", "accession": "GCA_000261325.1", "taxid": 302011, "species_taxid": 781, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3745, "matched_fragments": 284, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia rickettsii", "strain": "strain=Iowa", "accession": "GCA_000017445.3", "taxid": 783, "species_taxid": 783, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3733, "matched_fragments": 290, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia conorii subsp. israelensis", "strain": "strain=ISTT CDC1", "accession": "GCA_000263815.1", "taxid": 45258, "species_taxid": 781, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3718, "matched_fragments": 288, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia rickettsii", "strain": "strain=Iowa", "accession": "GCA_001951015.1", "taxid": 783, "species_taxid": 783, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3478, "matched_fragments": 293, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia typhi", "strain": "strain=Wilmington", "accession": "GCA_000008045.1", "taxid": 785, "species_taxid": 785, "relation_to_type": "type", "validated": true, "ani": 78.6318, "matched_fragments": 211, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016743795.1", "gtdb_species": "s__Rickettsia tillamookensis", "ani": 81.3354, "matched_fragments": 298, "total_fragments": 429, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;g__Rickettsia", "ani_circumscription_radius": 95.1029, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000828125.2", "gtdb_species": "s__Rickettsia asembonensis", "ani": 81.2242, "matched_fragments": 283, 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