{ "type": "genome", "identifier": "GCA_020427265.1", "organism": "Planctomycetales bacterium", "title": "Planctomycetales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020427265.1", "bioproject": "PRJNA432264", "biosample": "SAMN14564041", "wgs_master": "JAGQOS000000000.1", "refseq_category": "na", "taxid": "2053591", "species_taxid": "2053591", "organism_name": "Planctomycetales bacterium", "infraspecific_name": "", "isolate": "HKST-UBA20", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/12", "asm_name": "ASM2042726v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/427/265/GCA_020427265.1_ASM2042726v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-12", "dateModified": "2021-10-12", "datePublished": "2021-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Planctomycetales bacterium" ], "sample_taxid": [ "2053591" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "1.422 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 61.46, "contamination": 12.5, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4982963", "Number of Sequences": "711", "Longest Sequences (bp)": "44891", "N50 (bp)": "9677", "Gap Ratio (%)": "0.001244", "GCcontent (%)": "59.6", "Number of CDSs": "3146", "Average Protein Length": "351.4", "Coding Ratio (%)": "66.6", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Posidoniimonas polymericola", "strain": "strain=Pla123a", "accession": "GCA_007859935.1", "taxid": 2528002, "species_taxid": 2528002, "relation_to_type": "type", "validated": true, "ani": 75.3305, "matched_fragments": 57, "total_fragments": 1326, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacipirellula limnantheis", "strain": "strain=I41", "accession": "GCA_007746075.1", "taxid": 2528024, "species_taxid": 2528024, "relation_to_type": "type", "validated": true, "ani": 75.3156, "matched_fragments": 52, "total_fragments": 1326, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Posidoniimonas corsicana", "strain": "strain=KOR34", "accession": "GCA_007859765.1", "taxid": 1938618, "species_taxid": 1938618, "relation_to_type": "type", "validated": true, "ani": 75.1065, "matched_fragments": 50, "total_fragments": 1326, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacipirellula parvula", "strain": "strain=PX69", "accession": "GCA_009177095.1", "taxid": 2650471, "species_taxid": 2650471, "relation_to_type": "type", "validated": true, "ani": 75.0069, "matched_fragments": 51, "total_fragments": 1326, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 61.46, "contamination": 12.5, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007859935.1", "gtdb_species": "s__Posidoniimonas polymericola", "ani": 75.3455, "matched_fragments": 56, "total_fragments": 1326, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Posidoniimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007746075.1", "gtdb_species": "s__Lacipirellula limnantheis", "ani": 75.3156, "matched_fragments": 52, "total_fragments": 1326, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Lacipirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.19", "min_intra_species_ani": "97.19", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_007745835.1", "gtdb_species": "s__Botrimarina sp007745835", "ani": 75.2872, "matched_fragments": 50, "total_fragments": 1326, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Botrimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017303535.1", "gtdb_species": "s__PNKZ01 sp017303535", "ani": 75.1895, "matched_fragments": 51, "total_fragments": 1326, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__PNKZ01;g__PNKZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016793115.1", "gtdb_species": "s__PNKZ01 sp016793115", "ani": 75.0497, "matched_fragments": 63, "total_fragments": 1326, "gtdb_taxonomy": 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"d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__PLA5;g__PLA5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.083, "cell_length": 0.139, "doubling_h": 1.117, "growth_tmp": 28.294, "optimum_tmp": 27.699, "optimum_ph": 6.091, "genome_size": 7406693.402, "gc_content": 58.084, "coding_genes": 5540.533, "rRNA16S_genes": 2.5, "tRNA_genes": 57.7, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.75, "range_salinity": 1.0, "facultative_respiration": 0.058, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.941, "mesophilic_range_tmp": 0.9, "thermophilic_range_tmp": 0.1, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.714, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.285, "vibrio_cell_shape": 0.0, 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