{ "type": "genome", "identifier": "GCA_020430855.1", "organism": "Myxococcales bacterium", "title": "Myxococcales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020430855.1", "bioproject": "PRJNA432264", "biosample": "SAMN14563894", "wgs_master": "JAGQJB000000000.1", "refseq_category": "na", "taxid": "2026763", "species_taxid": "2026763", "organism_name": "Myxococcales bacterium", "infraspecific_name": "", "isolate": "HKST-UBA19", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/12", "asm_name": "ASM2043085v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/430/855/GCA_020430855.1_ASM2043085v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-12", "dateModified": "2021-10-12", "datePublished": "2021-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Myxococcales bacterium" ], "sample_taxid": [ "2026763" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "1.918 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 28.98, "contamination": 8.33, "strain_heterogeneity": 33.33, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7169991", "Number of Sequences": "1258", "Longest Sequences (bp)": "28329", "N50 (bp)": "6410", "Gap Ratio (%)": "0.055844", "GCcontent (%)": "71.9", "Number of CDSs": "5344", "Average Protein Length": "317.2", "Coding Ratio (%)": "70.9", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sandaracinus amylolyticus", "strain": "strain=DSM 53668", "accession": "GCA_000737325.2", "taxid": 927083, "species_taxid": 927083, "relation_to_type": "type", "validated": true, "ani": 75.6537, "matched_fragments": 761, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Labilithrix luteola", "strain": "strain=DSM 27648", "accession": "GCA_001263205.1", "taxid": 1391654, "species_taxid": 1391654, "relation_to_type": "type", "validated": true, "ani": 74.9146, "matched_fragments": 271, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chondromyces 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"taxid": 2567896, "species_taxid": 2567896, "relation_to_type": "type", "validated": true, "ani": 74.7834, "matched_fragments": 499, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haliangium ochraceum", "strain": "strain=DSM 14365", "accession": "GCA_000024805.1", "taxid": 80816, "species_taxid": 80816, "relation_to_type": "type", "validated": true, "ani": 74.7777, "matched_fragments": 359, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bowdeniella nasicola", "strain": "strain=DSM 19116", "accession": "GCA_001907295.1", "taxid": 208480, "species_taxid": 208480, "relation_to_type": "type", "validated": true, "ani": 74.6956, "matched_fragments": 58, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces bracchium", "strain": "strain=JCM 11433", "accession": "GCA_009709675.1", "taxid": 88376, "species_taxid": 88376, "relation_to_type": "type", "validated": true, "ani": 74.6689, "matched_fragments": 250, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Protaetiibacter larvae", "strain": "strain=KACC 19322", "accession": "GCA_008365275.1", "taxid": 2592654, "species_taxid": 2592654, "relation_to_type": "type", "validated": true, "ani": 74.6675, "matched_fragments": 131, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia silviterrae", "strain": "strain=4M-K11", "accession": "GCA_004353915.1", "taxid": 2528715, "species_taxid": 2528715, "relation_to_type": "type", "validated": true, "ani": 74.6602, "matched_fragments": 148, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces luteolus", "strain": "strain=JCM 11431", "accession": "GCA_009729855.1", "taxid": 88373, "species_taxid": 88373, "relation_to_type": "type", "validated": true, "ani": 74.6345, "matched_fragments": 264, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter lithotrophicus", "strain": "strain=RBP-1", "accession": "GCA_012184415.1", "taxid": 2606681, "species_taxid": 2606681, "relation_to_type": "type", "validated": true, "ani": 74.6278, "matched_fragments": 140, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Elioraea tepida", "strain": "strain=MS-P2", "accession": "GCA_019203965.1", "taxid": 2843330, "species_taxid": 2843330, "relation_to_type": "type", "validated": true, "ani": 74.6246, "matched_fragments": 127, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter mediterraneus", "strain": "strain=Marseille-P3256", "accession": "GCA_900119385.1", "taxid": 1871031, "species_taxid": 1871031, "relation_to_type": "type", "validated": true, "ani": 74.6052, "matched_fragments": 116, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium album", "strain": "strain=CGMCC 1.15794", "accession": "GCA_014643695.1", "taxid": 2053191, "species_taxid": 2053191, "relation_to_type": "type", "validated": true, "ani": 74.5903, "matched_fragments": 153, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas lenta", "strain": "strain=DSM 23960", "accession": "GCA_014196335.1", "taxid": 424796, "species_taxid": 424796, "relation_to_type": "type", "validated": true, "ani": 74.5844, "matched_fragments": 69, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=CB-286315", "accession": "GCA_013000925.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 74.5753, "matched_fragments": 114, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=CECT 8660", "accession": "GCA_014198875.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 74.5753, "matched_fragments": 114, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=DSM 29007", "accession": "GCA_014202995.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 74.5749, "matched_fragments": 113, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella umbonata", "strain": "strain=CECT 7753", "accession": "GCA_014192225.1", "taxid": 864828, "species_taxid": 864828, "relation_to_type": "type", "validated": true, "ani": 74.5708, "matched_fragments": 77, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia acidipaludis", "strain": "strain=NBRC 101816", "accession": "GCA_000684975.1", "taxid": 660537, "species_taxid": 660537, "relation_to_type": "type", "validated": true, "ani": 74.5515, "matched_fragments": 129, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 28.98, "contamination": 8.33, "strain_heterogeneity": 33.33 }, "gtdb_result": [ { "accession": "GCA_004213565.1", "gtdb_species": "s__MED-G138 sp004213565", "ani": 77.2248, "matched_fragments": 732, "total_fragments": 1763, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Sandaracinaceae;g__MED-G138", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000737325.1", "gtdb_species": "s__Sandaracinus amylolyticus", "ani": 75.682, "matched_fragments": 738, 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