{
    "type": "genome",
    "identifier": "GCA_020430965.1",
    "organism": "Myxococcales bacterium",
    "title": "Myxococcales bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020430965.1",
        "bioproject": "PRJNA432264",
        "biosample": "SAMN14563892",
        "wgs_master": "JAGQIZ000000000.1",
        "refseq_category": "na",
        "taxid": "2026763",
        "species_taxid": "2026763",
        "organism_name": "Myxococcales bacterium",
        "infraspecific_name": "",
        "isolate": "HKST-UBA17",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/12",
        "asm_name": "ASM2043096v1",
        "submitter": "The University Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/430/965/GCA_020430965.1_ASM2043096v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-12",
    "dateModified": "2021-10-12",
    "datePublished": "2021-10-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Myxococcales bacterium"
        ],
        "sample_taxid": [
            "2026763"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hong Kong SAR, Shatin waste water treatment plant"
        ],
        "sample_host_location_id": [],
        "data_size": "2.324 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 40.36,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "8483692",
        "Number of Sequences": "2156",
        "Longest Sequences (bp)": "24558",
        "N50 (bp)": "4759",
        "Gap Ratio (%)": "0.108797",
        "GCcontent (%)": "69.7",
        "Number of CDSs": "5571",
        "Average Protein Length": "305.8",
        "Coding Ratio (%)": "60.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Polyangium aurulentum",
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                "accession": "GCA_005144635.2",
                "taxid": 2567896,
                "species_taxid": 2567896,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1012,
                "matched_fragments": 330,
                "total_fragments": 1679,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chondromyces crocatus",
                "strain": "strain=Cm c5",
                "accession": "GCA_001189295.1",
                "taxid": 52,
                "species_taxid": 52,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9442,
                "matched_fragments": 215,
                "total_fragments": 1679,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Labilithrix luteola",
                "strain": "strain=DSM 27648",
                "accession": "GCA_001263205.1",
                "taxid": 1391654,
                "species_taxid": 1391654,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8616,
                "matched_fragments": 183,
                "total_fragments": 1679,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerotilus hippei",
                "strain": "strain=DSM 566",
                "accession": "GCA_003201595.1",
                "taxid": 744406,
                "species_taxid": 744406,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6415,
                "matched_fragments": 65,
                "total_fragments": 1679,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubrivivax benzoatilyticus",
                "strain": "strain=JA2",
                "accession": "GCA_000190375.2",
                "taxid": 316997,
                "species_taxid": 316997,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.5993,
                "matched_fragments": 90,
                "total_fragments": 1679,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 40.36,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016875405.1",
                "gtdb_species": "s__SYFR01 sp016875405",
                "ani": 75.7637,
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                "total_fragments": 1679,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__SYFR01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005800325.1",
                "gtdb_species": "s__SYFR01 sp005800325",
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                "matched_fragments": 175,
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                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__SYFR01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016212965.1",
                "gtdb_species": "s__JACRDA01 sp016212965",
                "ani": 75.2794,
                "matched_fragments": 387,
                "total_fragments": 1679,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__JACRDA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005144635.1",
                "gtdb_species": "s__Polyangium sp005144635",
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                "matched_fragments": 327,
                "total_fragments": 1679,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Polyangium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000067165.1",
                "gtdb_species": "s__Sorangium cellulosum_B",
                "ani": 75.0301,
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                "total_fragments": 1679,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000418325.1",
                "gtdb_species": "s__Sorangium cellulosum_D",
                "ani": 74.997,
                "matched_fragments": 448,
                "total_fragments": 1679,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.45",
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                "mean_intra_species_af": "0.82",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903906315.1",
                "gtdb_species": "s__CAIVJW01 sp903906315",
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                "matched_fragments": 324,
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                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__CAIVJW01",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_004135735.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_004213565.1",
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                "matched_fragments": 269,
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                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Sandaracinaceae;g__MED-G138",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCA_012744445.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__JAAYBZ01",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.126,
        "cell_length": 0.61,
        "doubling_h": 0.801,
        "growth_tmp": 28.761,
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        "coding_genes": 8198.189,
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        "sporulation": 0.928,
        "motility": 0.941,
        "range_salinity": 0.75,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
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    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Myxococcota",
        "c__Polyangia",
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        "f__Polyangiaceae",
        "g__JAPYTK01",
        "s__"
    ],
    "_genome_taxon": [
        "Myxococcales",
        "bacterium",
        "d__Bacteria",
        "p__Myxococcota",
        "c__Polyangia",
        "o__Polyangiales",
        "f__Polyangiaceae",
        "g__JAPYTK01",
        "s__",
        "Bacteria",
        "Myxococcota",
        "Polyangia",
        "Polyangiales",
        "Polyangiaceae",
        "JAPYTK01",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}