{ "type": "genome", "identifier": "GCA_020431205.1", "organism": "Myxococcales bacterium", "title": "Myxococcales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020431205.1", "bioproject": "PRJNA432264", "biosample": "SAMN14563885", "wgs_master": "JAGQIS000000000.1", "refseq_category": "na", "taxid": "2026763", "species_taxid": "2026763", "organism_name": "Myxococcales bacterium", "infraspecific_name": "", "isolate": "HKST-UBA10", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/12", "asm_name": "ASM2043120v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/431/205/GCA_020431205.1_ASM2043120v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-12", "dateModified": "2021-10-12", "datePublished": "2021-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Myxococcales bacterium" ], "sample_taxid": [ "2026763" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "2.711 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 72.49, "contamination": 6.71, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "10184625", "Number of Sequences": "501", "Longest Sequences (bp)": "97042", "N50 (bp)": "32630", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.0", "Number of CDSs": "7966", "Average Protein Length": "364.5", "Coding Ratio (%)": "85.5", "Number of rRNAs": "1", "Number of tRNAs": "71", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nannocystis exedens", "strain": "strain=DSM 71", "accession": "GCA_002343915.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 76.2708, "matched_fragments": 1063, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=ATCC 25963", "accession": "GCA_900112715.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 76.2568, "matched_fragments": 1055, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plesiocystis pacifica", "strain": "strain=SIR-1", "accession": "GCA_000170895.1", "taxid": 191768, "species_taxid": 191768, "relation_to_type": "type", "validated": true, "ani": 76.2454, "matched_fragments": 1029, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haliangium ochraceum", "strain": "strain=DSM 14365", "accession": "GCA_000024805.1", "taxid": 80816, "species_taxid": 80816, "relation_to_type": "type", "validated": true, "ani": 75.3084, "matched_fragments": 709, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulgatibacter incomptus", "strain": "strain=DSM 27710", "accession": "GCA_001263175.1", "taxid": 1391653, "species_taxid": 1391653, "relation_to_type": "type", "validated": true, "ani": 75.2774, "matched_fragments": 233, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalbus denitrificans", "strain": "strain=DSM 26407", "accession": "GCA_003337735.1", "taxid": 547122, "species_taxid": 547122, "relation_to_type": "type", "validated": true, "ani": 75.1387, "matched_fragments": 253, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 75.1144, "matched_fragments": 344, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenzhouxiangella sediminis", "strain": "strain=XDB06", "accession": "GCA_003410055.1", "taxid": 1792836, "species_taxid": 1792836, "relation_to_type": "type", "validated": true, "ani": 75.0474, "matched_fragments": 121, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_021049305.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 74.9932, "matched_fragments": 270, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=DSM 14263", "accession": "GCA_003148905.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 74.9698, "matched_fragments": 344, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 74.9511, "matched_fragments": 337, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus llansteffanensis", "strain": "strain=CA051B", "accession": "GCA_003612055.1", "taxid": 2316731, "species_taxid": 2316731, "relation_to_type": "type", "validated": true, "ani": 74.9457, "matched_fragments": 421, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus sicarius", "strain": "strain=CA040B", "accession": "GCA_003611735.1", "taxid": 2316726, "species_taxid": 2316726, "relation_to_type": "type", "validated": true, "ani": 74.9429, "matched_fragments": 406, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfohalovibrio alkalitolerans", "strain": "strain=DSM 16529", "accession": "GCA_000422245.1", "taxid": 293256, "species_taxid": 293256, "relation_to_type": "type", "validated": true, "ani": 74.9394, "matched_fragments": 95, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovibrio sulfidiphilus", "strain": "strain=DSM 23193", "accession": "GCA_014861485.1", "taxid": 1220600, "species_taxid": 1220600, "relation_to_type": "type", "validated": true, "ani": 74.9287, "matched_fragments": 60, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hypericibacter adhaerens", "strain": "strain=R5959", "accession": "GCA_008728835.1", "taxid": 2602016, "species_taxid": 2602016, "relation_to_type": "type", "validated": true, "ani": 74.9246, "matched_fragments": 214, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium aurulentum", "strain": "strain=SDU3-1", "accession": "GCA_005144635.2", "taxid": 2567896, "species_taxid": 2567896, "relation_to_type": "type", "validated": true, "ani": 74.9058, "matched_fragments": 630, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deferrisoma camini", "strain": "strain=S3R1", "accession": "GCA_000526155.1", "taxid": 1035120, "species_taxid": 1035120, "relation_to_type": "type", "validated": true, "ani": 74.8974, "matched_fragments": 199, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus aquimaris", "strain": "strain=NSG39", "accession": "GCA_001997345.1", "taxid": 1332264, "species_taxid": 1332264, "relation_to_type": "type", "validated": true, "ani": 74.8743, "matched_fragments": 149, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 74.8488, "matched_fragments": 452, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora globispora", "strain": "strain=S2901", "accession": "GCA_003857015.1", "taxid": 1450148, "species_taxid": 1450148, "relation_to_type": "type", "validated": true, "ani": 74.8254, "matched_fragments": 283, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus marinus", "strain": "strain=DSM 15273", "accession": "GCA_008386315.1", "taxid": 247333, "species_taxid": 247333, "relation_to_type": "type", "validated": true, "ani": 74.7989, "matched_fragments": 254, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium nesterenkovii", "strain": "strain=CIP104813", "accession": "GCA_900163655.1", "taxid": 47847, "species_taxid": 47847, "relation_to_type": "type", "validated": true, "ani": 74.7627, "matched_fragments": 206, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrimesophilobacter mesophilus", "strain": "strain=DSM 19267", "accession": "GCA_014200375.1", "taxid": 433647, "species_taxid": 433647, "relation_to_type": "type", "validated": true, "ani": 74.7506, "matched_fragments": 68, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium ureisolvens", "strain": "strain=CFH S00084", "accession": "GCA_015278315.1", "taxid": 2781186, "species_taxid": 2781186, "relation_to_type": "type", "validated": true, "ani": 74.7158, "matched_fragments": 231, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces yatensis", "strain": "strain=DSM 41771", "accession": "GCA_018069625.1", "taxid": 155177, "species_taxid": 155177, "relation_to_type": "type", "validated": true, "ani": 74.7088, "matched_fragments": 437, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinithermus hydrothermalis", "strain": "strain=DSM 14884", "accession": "GCA_000195335.1", "taxid": 186192, "species_taxid": 186192, "relation_to_type": "type", "validated": true, "ani": 74.6267, "matched_fragments": 87, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena alkaliphila", "strain": "strain=KZCA68", "accession": "GCA_017352155.2", "taxid": 2816475, "species_taxid": 2816475, "relation_to_type": "type", "validated": true, "ani": 74.626, "matched_fragments": 124, "total_fragments": 3139, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 72.49, "contamination": 6.71, "strain_heterogeneity": 66.67 }, "gtdb_result": [ { "accession": "GCA_016709225.1", "gtdb_species": "s__Ga0077550 sp016709225", "ani": 77.0509, "matched_fragments": 1107, "total_fragments": 3139, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Nannocystales;f__Nannocystaceae;g__Ga0077550", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.66", "min_intra_species_ani": "99.17", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.94", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_001464385.1", "gtdb_species": "s__Ga0077550 sp001464385", "ani": 76.9434, "matched_fragments": 1177, "total_fragments": 3139, "gtdb_taxonomy": 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