{
    "type": "genome",
    "identifier": "GCA_020433565.1",
    "organism": "Caldilineaceae bacterium",
    "title": "Caldilineaceae bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020433565.1",
        "bioproject": "PRJNA432264",
        "biosample": "SAMN14563017",
        "wgs_master": "JAGRCM000000000.1",
        "refseq_category": "na",
        "taxid": "2614250",
        "species_taxid": "2614250",
        "organism_name": "Caldilineaceae bacterium",
        "infraspecific_name": "",
        "isolate": "HKST-UBA26",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/12",
        "asm_name": "ASM2043356v1",
        "submitter": "The University Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/433/565/GCA_020433565.1_ASM2043356v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-12",
    "dateModified": "2021-10-12",
    "datePublished": "2021-10-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Caldilineaceae bacterium"
        ],
        "sample_taxid": [
            "2614250"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hong Kong SAR, Shatin waste water treatment plant"
        ],
        "sample_host_location_id": [],
        "data_size": "1.497 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 52.27,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5271504",
        "Number of Sequences": "1532",
        "Longest Sequences (bp)": "21479",
        "N50 (bp)": "3937",
        "Gap Ratio (%)": "0.130266",
        "GCcontent (%)": "61.0",
        "Number of CDSs": "3117",
        "Average Protein Length": "310.9",
        "Coding Ratio (%)": "55.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "24",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Litorilinea aerophila",
                "strain": "strain=ATCC BAA-2444",
                "accession": "GCA_006569185.2",
                "taxid": 1204385,
                "species_taxid": 1204385,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9482,
                "matched_fragments": 98,
                "total_fragments": 875,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 52.27,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016124945.1",
                "gtdb_species": "s__RI-153 sp016124945",
                "ani": 81.4105,
                "matched_fragments": 563,
                "total_fragments": 875,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__RI-153",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015494005.1",
                "gtdb_species": "s__S144-5 sp015494005",
                "ani": 76.1358,
                "matched_fragments": 64,
                "total_fragments": 875,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__S144-5",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006569185.1",
                "gtdb_species": "s__Litorilinea aerophila",
                "ani": 75.9482,
                "matched_fragments": 98,
                "total_fragments": 875,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Litorilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.85",
                "min_intra_species_ani": "99.85",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016710365.1",
                "gtdb_species": "s__Caldilinea sp016710365",
                "ani": 75.6116,
                "matched_fragments": 59,
                "total_fragments": 875,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018003515.1",
                "gtdb_species": "s__JAGNDO01 sp018003515",
                "ani": 75.4357,
                "matched_fragments": 73,
                "total_fragments": 875,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__JAGNDO01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.85",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_003577005.1",
                "gtdb_species": "s__CFX5 sp003577005",
                "ani": 75.4155,
                "matched_fragments": 54,
                "total_fragments": 875,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__CFX5",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009840225.1",
                "gtdb_species": "s__Bin5 sp009840225",
                "ani": 75.2792,
                "matched_fragments": 50,
                "total_fragments": 875,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Bin5",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.63",
                "min_intra_species_ani": "95.35",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": -0.155,
        "doubling_h": 0.906,
        "growth_tmp": 54.666,
        "optimum_tmp": 55.0,
        "optimum_ph": 7.5,
        "genome_size": 5143605.4,
        "gc_content": 58.8,
        "coding_genes": 4056.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 47.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.333,
        "anaerobic_respiration": 0.333,
        "aerobic_respiration": 0.333,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Anaerolineae",
        "o__Caldilineales",
        "f__Caldilineaceae",
        "g__RI-153",
        "s__"
    ],
    "_genome_taxon": [
        "Caldilineaceae",
        "bacterium",
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Anaerolineae",
        "o__Caldilineales",
        "f__Caldilineaceae",
        "g__RI-153",
        "s__",
        "Bacteria",
        "Chloroflexota",
        "Anaerolineae",
        "Caldilineales",
        "Caldilineaceae",
        "RI-153",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}