{ "type": "genome", "identifier": "GCA_020433585.1", "organism": "Caldilineaceae bacterium", "title": "Caldilineaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020433585.1", "bioproject": "PRJNA432264", "biosample": "SAMN14563015", "wgs_master": "JAGRCK000000000.1", "refseq_category": "na", "taxid": "2614250", "species_taxid": "2614250", "organism_name": "Caldilineaceae bacterium", "infraspecific_name": "", "isolate": "HKST-UBA24", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/12", "asm_name": "ASM2043358v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/433/585/GCA_020433585.1_ASM2043358v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-12", "dateModified": "2021-10-12", "datePublished": "2021-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Caldilineaceae bacterium" ], "sample_taxid": [ "2614250" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "1.693 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 69.55, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6129668", "Number of Sequences": "2320", "Longest Sequences (bp)": "27822", "N50 (bp)": "3140", "Gap Ratio (%)": "3.429615", "GCcontent (%)": "64.1", "Number of CDSs": "3139", "Average Protein Length": "267.8", "Coding Ratio (%)": "41.1", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Caldilinea aerophila", "strain": "strain=DSM 14535", "accession": "GCA_000281175.1", "taxid": 133453, "species_taxid": 133453, "relation_to_type": "type", "validated": true, "ani": 77.0637, "matched_fragments": 174, "total_fragments": 845, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litorilinea aerophila", "strain": "strain=ATCC BAA-2444", "accession": "GCA_006569185.2", "taxid": 1204385, "species_taxid": 1204385, "relation_to_type": "type", "validated": true, "ani": 76.3879, "matched_fragments": 96, "total_fragments": 845, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas cervicalis", "strain": "strain=ATCC 49957", "accession": "GCA_000164635.1", "taxid": 204525, "species_taxid": 204525, "relation_to_type": "type", "validated": true, "ani": 75.0066, "matched_fragments": 73, "total_fragments": 845, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea deserti", "strain": "strain=KC310", "accession": "GCA_004348685.1", "taxid": 1848322, "species_taxid": 1848322, "relation_to_type": "type", "validated": true, "ani": 74.9544, "matched_fragments": 61, "total_fragments": 845, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea harbinensis", "strain": "strain=CGMCC 4.7106", "accession": "GCA_019396385.1", "taxid": 1286938, "species_taxid": 1286938, "relation_to_type": "type", "validated": true, "ani": 74.904, "matched_fragments": 59, "total_fragments": 845, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000420125.1", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 74.7777, "matched_fragments": 62, "total_fragments": 845, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000190375.2", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 74.7768, "matched_fragments": 60, "total_fragments": 845, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea spiralis", "strain": "strain=JCM 3286", "accession": "GCA_014648435.1", "taxid": 46182, "species_taxid": 46182, "relation_to_type": "type", "validated": true, "ani": 74.7494, "matched_fragments": 68, "total_fragments": 845, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 69.55, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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