{ "type": "genome", "identifier": "GCA_020435635.1", "organism": "Mangrovimonas sp.", "title": "Mangrovimonas sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020435635.1", "bioproject": "PRJNA432264", "biosample": "SAMN14562935", "wgs_master": "JAGQZI000000000.1", "refseq_category": "na", "taxid": "2020865", "species_taxid": "2020865", "organism_name": "Mangrovimonas sp.", "infraspecific_name": "", "isolate": "HKST-UBA87", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/12", "asm_name": "ASM2043563v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/435/635/GCA_020435635.1_ASM2043563v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-12", "dateModified": "2021-10-12", "datePublished": "2021-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Mangrovimonas sp." ], "sample_taxid": [ "2020865" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "0.687 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 77.31, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2371302", "Number of Sequences": "725", "Longest Sequences (bp)": "39355", "N50 (bp)": "5355", "Gap Ratio (%)": "0.781722", "GCcontent (%)": "38.2", "Number of CDSs": "1590", "Average Protein Length": "294.8", "Coding Ratio (%)": "59.3", "Number of rRNAs": "1", "Number of tRNAs": "23", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mariniflexile gromovii", "strain": "strain=KCTC 12570", "accession": "GCA_017814435.1", "taxid": 362523, "species_taxid": 362523, "relation_to_type": "type", "validated": true, "ani": 77.885, "matched_fragments": 67, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yeosuana aromativorans", "strain": "strain=JCM 12862", "accession": "GCA_014646655.1", "taxid": 288019, "species_taxid": 288019, "relation_to_type": "type", "validated": true, "ani": 77.404, "matched_fragments": 79, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovimonas yunxiaonensis", "strain": "strain=CGMCC 1.12280", "accession": "GCA_014636995.1", "taxid": 1197477, "species_taxid": 1197477, "relation_to_type": "type", "validated": true, "ani": 77.3501, "matched_fragments": 68, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovimonas yunxiaonensis", "strain": "strain=LY01", "accession": "GCA_000733475.1", "taxid": 1197477, "species_taxid": 1197477, "relation_to_type": "type", "validated": true, "ani": 77.243, "matched_fragments": 67, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola algicola", "strain": "strain=Gy8", "accession": "GCA_007997385.1", "taxid": 1719036, "species_taxid": 1719036, "relation_to_type": "type", "validated": true, "ani": 77.1877, "matched_fragments": 57, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter lentus", "strain": "strain=HJM-3", "accession": "GCA_002806995.1", "taxid": 1699412, "species_taxid": 1699412, "relation_to_type": "type", "validated": true, "ani": 77.1557, "matched_fragments": 64, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana haliotis", "strain": "strain=B1N29", "accession": "GCA_008806375.1", "taxid": 2614804, "species_taxid": 2614804, "relation_to_type": "type", "validated": true, "ani": 77.1059, "matched_fragments": 51, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 77.0993, "matched_fragments": 55, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens marinum", "strain": "strain=MT3-5-12", "accession": "GCA_022662175.1", "taxid": 2913555, "species_taxid": 2913555, "relation_to_type": "type", "validated": true, "ani": 77.0662, "matched_fragments": 63, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens insulae", "strain": "strain=AH-MY3", "accession": "GCA_022662195.1", "taxid": 1621988, "species_taxid": 1621988, "relation_to_type": "type", "validated": true, "ani": 77.0157, "matched_fragments": 74, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomarina gelatinilytica", "strain": "strain=AK20", "accession": "GCA_000348685.1", "taxid": 1137281, "species_taxid": 1137281, "relation_to_type": "type", "validated": true, "ani": 76.9762, "matched_fragments": 70, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 76.9682, "matched_fragments": 59, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana crocina", "strain": "strain=HST1-43", "accession": "GCA_012037625.1", "taxid": 393006, "species_taxid": 393006, "relation_to_type": "type", "validated": true, "ani": 76.9671, "matched_fragments": 65, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter sediminis", "strain": "strain=DSL-48", "accession": "GCA_003258355.1", "taxid": 2219045, "species_taxid": 2219045, "relation_to_type": "type", "validated": true, "ani": 76.8965, "matched_fragments": 61, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter mesophilus", "strain": "strain=DSM 14095", "accession": "GCA_000423005.1", "taxid": 169050, "species_taxid": 169050, "relation_to_type": "type", "validated": true, "ani": 76.7732, "matched_fragments": 62, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella undariae", "strain": "strain=CCUG 63832", "accession": "GCA_013285155.1", "taxid": 1285465, "species_taxid": 1285465, "relation_to_type": "type", "validated": true, "ani": 76.6793, "matched_fragments": 50, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens jangbogonensis", "strain": "strain=PAMC 27130", "accession": "GCA_000797465.1", "taxid": 1484460, "species_taxid": 1484460, "relation_to_type": "type", "validated": true, "ani": 76.5278, "matched_fragments": 55, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 77.31, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017814435.1", "gtdb_species": "s__Mariniflexile gromovii", "ani": 77.885, "matched_fragments": 67, "total_fragments": 458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mariniflexile", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014646655.1", "gtdb_species": "s__Yeosuana aromativorans", "ani": 77.4397, "matched_fragments": 78, "total_fragments": 458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Yeosuana", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002973595.1", "gtdb_species": "s__Jejuia pallidilutea", "ani": 77.4226, "matched_fragments": 57, "total_fragments": 458, "gtdb_taxonomy": 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