{ "type": "genome", "identifier": "GCA_020435665.1", "organism": "Mangrovimonas sp.", "title": "Mangrovimonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020435665.1", "bioproject": "PRJNA432264", "biosample": "SAMN14562934", "wgs_master": "JAGQZH000000000.1", "refseq_category": "na", "taxid": "2020865", "species_taxid": "2020865", "organism_name": "Mangrovimonas sp.", "infraspecific_name": "", "isolate": "HKST-UBA86", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/12", "asm_name": "ASM2043566v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/435/665/GCA_020435665.1_ASM2043566v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-12", "dateModified": "2021-10-12", "datePublished": "2021-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Mangrovimonas sp." ], "sample_taxid": [ "2020865" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "0.780 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.51, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2711852", "Number of Sequences": "538", "Longest Sequences (bp)": "42766", "N50 (bp)": "8449", "Gap Ratio (%)": "0.601913", "GCcontent (%)": "38.2", "Number of CDSs": "1984", "Average Protein Length": "313.6", "Coding Ratio (%)": "68.8", "Number of rRNAs": "1", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mariniflexile gromovii", "strain": "strain=KCTC 12570", "accession": "GCA_017814435.1", "taxid": 362523, "species_taxid": 362523, "relation_to_type": "type", "validated": true, "ani": 77.4645, "matched_fragments": 90, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yeosuana marina", "strain": "strain=JLT21", "accession": "GCA_011762485.1", "taxid": 1565536, "species_taxid": 1565536, "relation_to_type": "type", "validated": true, "ani": 77.4449, "matched_fragments": 75, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola algicola", "strain": "strain=Gy8", "accession": "GCA_007997385.1", "taxid": 1719036, "species_taxid": 1719036, "relation_to_type": "type", "validated": true, "ani": 77.4355, "matched_fragments": 69, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana nanhaiensis", "strain": "strain=FHC16", "accession": "GCA_000943555.1", "taxid": 1382798, "species_taxid": 1382798, "relation_to_type": "type", "validated": true, "ani": 77.3137, "matched_fragments": 74, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter sediminis", "strain": "strain=DSL-48", "accession": "GCA_003258355.1", "taxid": 2219045, "species_taxid": 2219045, "relation_to_type": "type", "validated": true, "ani": 77.3071, "matched_fragments": 75, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana haliotis", "strain": "strain=B1N29", "accession": "GCA_008806375.1", "taxid": 2614804, "species_taxid": 2614804, "relation_to_type": "type", "validated": true, "ani": 77.2676, "matched_fragments": 56, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yeosuana aromativorans", "strain": "strain=JCM 12862", "accession": "GCA_014646655.1", "taxid": 288019, "species_taxid": 288019, "relation_to_type": "type", "validated": true, "ani": 77.2435, "matched_fragments": 93, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovimonas spongiae", "strain": "strain=HN-E26", "accession": "GCA_003944795.1", "taxid": 2494697, "species_taxid": 2494697, "relation_to_type": "type", "validated": true, "ani": 77.1669, "matched_fragments": 92, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens insulae", "strain": "strain=AH-MY3", "accession": "GCA_022662195.1", "taxid": 1621988, "species_taxid": 1621988, "relation_to_type": "type", "validated": true, "ani": 77.1476, "matched_fragments": 85, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovimonas yunxiaonensis", "strain": "strain=CGMCC 1.12280", "accession": "GCA_014636995.1", "taxid": 1197477, "species_taxid": 1197477, "relation_to_type": "type", "validated": true, "ani": 77.0886, "matched_fragments": 84, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter pelagius", "strain": "strain=DF109", "accession": "GCA_017581925.1", "taxid": 2819985, "species_taxid": 2819985, "relation_to_type": "type", "validated": true, "ani": 77.0782, "matched_fragments": 54, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomarina gelatinilytica", "strain": "strain=AK20", "accession": "GCA_000348685.1", "taxid": 1137281, "species_taxid": 1137281, "relation_to_type": "type", "validated": true, "ani": 77.0732, "matched_fragments": 83, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovimonas yunxiaonensis", "strain": "strain=LY01", "accession": "GCA_000733475.1", "taxid": 1197477, "species_taxid": 1197477, "relation_to_type": "type", "validated": true, "ani": 77.0633, "matched_fragments": 84, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 77.0508, "matched_fragments": 71, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter mesophilus", "strain": "strain=DSM 14095", "accession": "GCA_000423005.1", "taxid": 169050, "species_taxid": 169050, "relation_to_type": "type", "validated": true, "ani": 77.0483, "matched_fragments": 68, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 76.9693, "matched_fragments": 66, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 76.8254, "matched_fragments": 65, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter lentus", "strain": "strain=HJM-3", "accession": "GCA_002806995.1", "taxid": 1699412, "species_taxid": 1699412, "relation_to_type": "type", "validated": true, "ani": 76.8079, "matched_fragments": 87, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.51, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006265225.1", "gtdb_species": "s__Tamlana_C fucoidanivorans", "ani": 77.5819, "matched_fragments": 58, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tamlana_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018883545.1", "gtdb_species": "s__Confluentibacter sp018883545", "ani": 77.4906, "matched_fragments": 88, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Confluentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017814435.1", "gtdb_species": "s__Mariniflexile gromovii", "ani": 77.4645, "matched_fragments": 90, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mariniflexile", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007997385.1", "gtdb_species": "s__Seonamhaeicola algicola", "ani": 77.4339, "matched_fragments": 68, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Seonamhaeicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008806375.1", "gtdb_species": "s__Tamlana_A haliotis", "ani": 77.3081, "matched_fragments": 55, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tamlana_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003258355.1", "gtdb_species": "s__Confluentibacter sp003258355", "ani": 77.3071, "matched_fragments": 75, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Confluentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014646655.1", "gtdb_species": "s__Yeosuana aromativorans", "ani": 77.2675, "matched_fragments": 92, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Yeosuana", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002807055.1", "gtdb_species": "s__Confluentibacter citreus", "ani": 77.1997, "matched_fragments": 84, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Confluentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001874335.1", "gtdb_species": "s__MedPE-SWsnd-G2 sp001874335", "ani": 77.1508, "matched_fragments": 51, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MedPE-SWsnd-G2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000425645.1", "gtdb_species": "s__Gaetbulibacter saemankumensis", "ani": 77.1261, "matched_fragments": 64, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gaetbulibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017581925.1", "gtdb_species": "s__Gelidibacter sp017581925", "ani": 77.0782, "matched_fragments": 54, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gelidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000348685.1", "gtdb_species": "s__Xanthomarina gelatinilytica", "ani": 77.0732, "matched_fragments": 83, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.37", "min_intra_species_ani": "98.31", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000733475.1", "gtdb_species": "s__Mangrovimonas yunxiaonensis", "ani": 77.0633, "matched_fragments": 84, "total_fragments": 643, "gtdb_taxonomy": 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mangrovimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.69", "min_intra_species_ani": "96.69", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_012910715.1", "gtdb_species": "s__Flavivirga sp012910715", "ani": 76.9693, "matched_fragments": 66, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001280505.1", "gtdb_species": "s__Mangrovimonas_A sp001280505", "ani": 76.966, "matched_fragments": 96, "total_fragments": 643, "gtdb_taxonomy": 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