{
    "type": "genome",
    "identifier": "GCA_020435725.1",
    "organism": "Gelidibacter sp.",
    "title": "Gelidibacter sp.",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "The University Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020435725.1",
        "bioproject": "PRJNA432264",
        "biosample": "SAMN14562931",
        "wgs_master": "JAGQZE000000000.1",
        "refseq_category": "na",
        "taxid": "2018083",
        "species_taxid": "2018083",
        "organism_name": "Gelidibacter sp.",
        "infraspecific_name": "",
        "isolate": "HKST-UBA83",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/12",
        "asm_name": "ASM2043572v1",
        "submitter": "The University Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/435/725/GCA_020435725.1_ASM2043572v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-12",
    "dateModified": "2021-10-12",
    "datePublished": "2021-10-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gelidibacter sp."
        ],
        "sample_taxid": [
            "2018083"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hong Kong SAR, Shatin waste water treatment plant"
        ],
        "sample_host_location_id": [],
        "data_size": "0.487 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 48.23,
        "contamination": 0.38,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1721923",
        "Number of Sequences": "661",
        "Longest Sequences (bp)": "13979",
        "N50 (bp)": "2921",
        "Gap Ratio (%)": "0.370109",
        "GCcontent (%)": "33.7",
        "Number of CDSs": "1069",
        "Average Protein Length": "269.7",
        "Coding Ratio (%)": "50.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "1",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Gelidibacter sediminis",
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                "accession": "GCA_004364975.1",
                "taxid": 1608710,
                "species_taxid": 1608710,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 60,
                "total_fragments": 218,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Psychroserpens mesophilus",
                "strain": "strain=JCM 13413",
                "accession": "GCA_000826645.1",
                "taxid": 325473,
                "species_taxid": 325473,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8556,
                "matched_fragments": 62,
                "total_fragments": 218,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomarina gelatinilytica",
                "strain": "strain=AK20",
                "accession": "GCA_000348685.1",
                "taxid": 1137281,
                "species_taxid": 1137281,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6667,
                "matched_fragments": 62,
                "total_fragments": 218,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Winogradskyella echinorum",
                "strain": "strain=KCTC 22026",
                "accession": "GCA_014284085.1",
                "taxid": 538189,
                "species_taxid": 538189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5695,
                "matched_fragments": 63,
                "total_fragments": 218,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Winogradskyella echinorum",
                "strain": "strain=KCTC 22026",
                "accession": "GCA_014297365.1",
                "taxid": 538189,
                "species_taxid": 538189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5695,
                "matched_fragments": 63,
                "total_fragments": 218,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mariniflexile fucanivorans",
                "strain": "strain=DSM 18792",
                "accession": "GCA_004341235.1",
                "taxid": 264023,
                "species_taxid": 264023,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4329,
                "matched_fragments": 63,
                "total_fragments": 218,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Confluentibacter flavum",
                "strain": "strain=3B",
                "accession": "GCA_002843175.1",
                "taxid": 1909700,
                "species_taxid": 1909700,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2231,
                "matched_fragments": 53,
                "total_fragments": 218,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 48.23,
            "contamination": 0.38,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_014641635.1",
                "gtdb_species": "s__Aquaticitalea lipolytica",
                "ani": 78.1076,
                "matched_fragments": 113,
                "total_fragments": 218,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquaticitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002426015.1",
                "gtdb_species": "s__Aquaticitalea sp002426015",
                "ani": 77.9695,
                "matched_fragments": 114,
                "total_fragments": 218,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquaticitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004366715.1",
                "gtdb_species": "s__Meridianimaribacter flavus",
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                "matched_fragments": 87,
                "total_fragments": 218,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Meridianimaribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "97.06",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014638915.1",
                "gtdb_species": "s__Xanthomarina arctica",
                "ani": 77.1249,
                "matched_fragments": 64,
                "total_fragments": 218,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004364975.1",
                "gtdb_species": "s__Gelidibacter sediminis",
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                "total_fragments": 218,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gelidibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008084905.1",
                "gtdb_species": "s__Xanthomarina maritima",
                "ani": 76.9194,
                "matched_fragments": 64,
                "total_fragments": 218,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016744625.1",
                "gtdb_species": "s__Winogradskyella sp016744625",
                "ani": 76.4985,
                "matched_fragments": 57,
                "total_fragments": 218,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.601,
        "doubling_h": null,
        "growth_tmp": 20.8,
        "optimum_tmp": 17.666,
        "optimum_ph": null,
        "genome_size": 4151575.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.666,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Flavobacteriales",
        "f__Flavobacteriaceae",
        "g__Gelidibacter",
        "s__"
    ],
    "_genome_taxon": [
        "Gelidibacter",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Flavobacteriales",
        "f__Flavobacteriaceae",
        "g__Gelidibacter",
        "s__",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Flavobacteriales",
        "Flavobacteriaceae",
        "Gelidibacter",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}