{
    "type": "genome",
    "identifier": "GCA_020436535.1",
    "organism": "Phaeodactylibacter sp.",
    "title": "Phaeodactylibacter sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "The University Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020436535.1",
        "bioproject": "PRJNA432264",
        "biosample": "SAMN14562891",
        "wgs_master": "JAGQXQ000000000.1",
        "refseq_category": "na",
        "taxid": "1940289",
        "species_taxid": "1940289",
        "organism_name": "Phaeodactylibacter sp.",
        "infraspecific_name": "",
        "isolate": "HKST-UBA43",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/12",
        "asm_name": "ASM2043653v1",
        "submitter": "The University Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/436/535/GCA_020436535.1_ASM2043653v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-12",
    "dateModified": "2021-10-12",
    "datePublished": "2021-10-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Phaeodactylibacter sp."
        ],
        "sample_taxid": [
            "1940289"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hong Kong SAR, Shatin waste water treatment plant"
        ],
        "sample_host_location_id": [],
        "data_size": "1.929 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 76.85,
        "contamination": 3.12,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "6751460",
        "Number of Sequences": "702",
        "Longest Sequences (bp)": "66925",
        "N50 (bp)": "13001",
        "Gap Ratio (%)": "0.548874",
        "GCcontent (%)": "51.3",
        "Number of CDSs": "4499",
        "Average Protein Length": "368.4",
        "Coding Ratio (%)": "73.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "20",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Phaeodactylibacter luteus",
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                "accession": "GCA_007993045.1",
                "taxid": 1564516,
                "species_taxid": 1564516,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 80,
                "total_fragments": 1893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phaeodactylibacter xiamenensis",
                "strain": "strain=KD52",
                "accession": "GCA_000759025.1",
                "taxid": 1524460,
                "species_taxid": 1524460,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.808,
                "matched_fragments": 95,
                "total_fragments": 1893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavilitoribacter nigricans",
                "strain": "strain=NBRC 102662",
                "accession": "GCA_002646595.1",
                "taxid": 70997,
                "species_taxid": 70997,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.59,
                "matched_fragments": 82,
                "total_fragments": 1893,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 76.85,
            "contamination": 3.12,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007993045.1",
                "gtdb_species": "s__Phaeodactylibacter luteus",
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                "matched_fragments": 80,
                "total_fragments": 1893,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Phaeodactylibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000759025.1",
                "gtdb_species": "s__Phaeodactylibacter xiamenensis",
                "ani": 75.808,
                "matched_fragments": 95,
                "total_fragments": 1893,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Phaeodactylibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002646595.1",
                "gtdb_species": "s__Flavilitoribacter nigricans",
                "ani": 75.59,
                "matched_fragments": 82,
                "total_fragments": 1893,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Flavilitoribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016703765.1",
                "gtdb_species": "s__JADJTT01 sp016703765",
                "ani": 75.5642,
                "matched_fragments": 55,
                "total_fragments": 1893,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__JADJTT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.25",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002344975.1",
                "gtdb_species": "s__UBA2329 sp002344975",
                "ani": 75.5309,
                "matched_fragments": 54,
                "total_fragments": 1893,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__UBA2329",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.24",
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                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_009908745.1",
                "gtdb_species": "s__Phaeodactylibacter sp009908745",
                "ani": 75.4715,
                "matched_fragments": 93,
                "total_fragments": 1893,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Phaeodactylibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016715405.1",
                "gtdb_species": "s__JABWBR01 sp016715405",
                "ani": 75.2779,
                "matched_fragments": 62,
                "total_fragments": 1893,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__JABWBR01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013360405.1",
                "gtdb_species": "s__JABWBR01 sp013360405",
                "ani": 75.247,
                "matched_fragments": 60,
                "total_fragments": 1893,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__JABWBR01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 7868778.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Chitinophagales",
        "f__Saprospiraceae",
        "g__JACJXW01",
        "s__JACJXW01 sp020436535"
    ],
    "_genome_taxon": [
        "Phaeodactylibacter",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Chitinophagales",
        "f__Saprospiraceae",
        "g__JACJXW01",
        "s__JACJXW01 sp020436535",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Chitinophagales",
        "Saprospiraceae",
        "JACJXW01",
        "JACJXW01",
        "sp020436535"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}