{ "type": "genome", "identifier": "GCA_020436595.1", "organism": "Phaeodactylibacter sp.", "title": "Phaeodactylibacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020436595.1", "bioproject": "PRJNA432264", "biosample": "SAMN14562888", "wgs_master": "JAGQXN000000000.1", "refseq_category": "na", "taxid": "1940289", "species_taxid": "1940289", "organism_name": "Phaeodactylibacter sp.", "infraspecific_name": "", "isolate": "HKST-UBA40", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/12", "asm_name": "ASM2043659v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/436/595/GCA_020436595.1_ASM2043659v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-12", "dateModified": "2021-10-12", "datePublished": "2021-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Phaeodactylibacter sp." ], "sample_taxid": [ "1940289" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "1.721 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.44, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6034106", "Number of Sequences": "712", "Longest Sequences (bp)": "53429", "N50 (bp)": "11683", "Gap Ratio (%)": "0.160355", "GCcontent (%)": "55.4", "Number of CDSs": "4084", "Average Protein Length": "376.0", "Coding Ratio (%)": "76.3", "Number of rRNAs": "0", "Number of tRNAs": "13", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phaeodactylibacter luteus", "strain": "strain=KCTC 42180", "accession": "GCA_007993045.1", "taxid": 1564516, "species_taxid": 1564516, "relation_to_type": "type", "validated": true, "ani": 75.4865, "matched_fragments": 69, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella marina", "strain": "strain=MKG-38", "accession": "GCA_002631205.1", "taxid": 438751, "species_taxid": 438751, "relation_to_type": "type", "validated": true, "ani": 75.2424, "matched_fragments": 53, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella marina", "strain": "strain=DSM 104084", "accession": "GCA_011927705.1", "taxid": 438751, "species_taxid": 438751, "relation_to_type": "type", "validated": true, "ani": 75.2314, "matched_fragments": 54, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.44, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_015490175.1", "gtdb_species": "s__WFYJ01 sp015490175", "ani": 75.8313, "matched_fragments": 78, "total_fragments": 1645, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__WFYJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016715405.1", "gtdb_species": "s__JABWBR01 sp016715405", "ani": 75.6568, "matched_fragments": 93, "total_fragments": 1645, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__JABWBR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013360405.1", "gtdb_species": "s__JABWBR01 sp013360405", "ani": 75.6203, "matched_fragments": 108, "total_fragments": 1645, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__JABWBR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016703765.1", "gtdb_species": "s__JADJTT01 sp016703765", "ani": 75.5672, "matched_fragments": 86, "total_fragments": 1645, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__JADJTT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.25", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_016711045.1", "gtdb_species": "s__JADJTT01 sp016711045", "ani": 75.5448, "matched_fragments": 54, "total_fragments": 1645, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__JADJTT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016713275.1", "gtdb_species": "s__JADJPL01 sp016713275", "ani": 75.5193, "matched_fragments": 64, "total_fragments": 1645, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__JADJPL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.18", "min_intra_species_ani": "95.41", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_007993045.1", "gtdb_species": "s__Phaeodactylibacter luteus", "ani": 75.4865, "matched_fragments": 69, "total_fragments": 1645, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Phaeodactylibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009908745.1", "gtdb_species": "s__Phaeodactylibacter sp009908745", "ani": 75.4484, "matched_fragments": 83, "total_fragments": 1645, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Phaeodactylibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016234735.1", "gtdb_species": "s__UBA6168 sp016234735", "ani": 75.3702, "matched_fragments": 52, "total_fragments": 1645, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__UBA6168", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003045895.1", "gtdb_species": "s__Lewinella sp003045895", "ani": 75.2734, "matched_fragments": 68, "total_fragments": 1645, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015694525.1", "gtdb_species": "s__Hymenobacter ruricola", "ani": 74.97, "matched_fragments": 50, "total_fragments": 1645, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": 7868778.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Chitinophagales", "f__Saprospiraceae", "g__JACJYE01", "s__JACJYE01 sp020636255" ], "_genome_taxon": [ "Phaeodactylibacter", "sp.", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Chitinophagales", "f__Saprospiraceae", "g__JACJYE01", "s__JACJYE01 sp020636255", "Bacteria", "Bacteroidota", "Bacteroidia", "Chitinophagales", "Saprospiraceae", "JACJYE01", "JACJYE01", "sp020636255" ], "_meo": [ { "id": "MEO_0000014", "label": "activated sludge" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }