{ "type": "genome", "identifier": "GCA_020439245.1", "organism": "Microthrixaceae bacterium", "title": "Microthrixaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020439245.1", "bioproject": "PRJNA432264", "biosample": "SAMN14562771", "wgs_master": "JAGQTA000000000.1", "refseq_category": "na", "taxid": "2497627", "species_taxid": "2497627", "organism_name": "Microthrixaceae bacterium", "infraspecific_name": "", "isolate": "HKST-UBA21", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/12", "asm_name": "ASM2043924v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/439/245/GCA_020439245.1_ASM2043924v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-12", "dateModified": "2021-10-12", "datePublished": "2021-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Microthrixaceae bacterium" ], "sample_taxid": [ "2497627" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "0.905 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 93.06, "contamination": 2.15, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3363764", "Number of Sequences": "395", "Longest Sequences (bp)": "157418", "N50 (bp)": "22222", "Gap Ratio (%)": "0.057882", "GCcontent (%)": "71.4", "Number of CDSs": "2856", "Average Protein Length": "323.2", "Coding Ratio (%)": "82.3", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 77.4059, "matched_fragments": 293, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 77.2749, "matched_fragments": 290, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 77.0805, "matched_fragments": 201, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 76.1595, "matched_fragments": 265, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 76.1298, "matched_fragments": 212, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea coxensis", "strain": "strain=DSM 45129", "accession": "GCA_019397265.1", "taxid": 404386, "species_taxid": 404386, "relation_to_type": "type", "validated": true, "ani": 75.5281, "matched_fragments": 228, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, "species_taxid": 86174, "relation_to_type": "type", "validated": true, "ani": 75.5233, "matched_fragments": 68, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 75.5109, "matched_fragments": 158, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea coxensis", "strain": "strain=DSM 45129", "accession": "GCA_000379885.1", "taxid": 404386, "species_taxid": 404386, "relation_to_type": "type", "validated": true, "ani": 75.4905, "matched_fragments": 226, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 75.4668, "matched_fragments": 156, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium rufum", "strain": "strain=NBRC 109079", "accession": "GCA_016863395.1", "taxid": 1381558, "species_taxid": 1381558, "relation_to_type": "type", "validated": true, "ani": 75.4641, "matched_fragments": 222, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter peucedani", "strain": "strain=RP-AC37", "accession": "GCA_003634695.1", "taxid": 598650, "species_taxid": 598650, "relation_to_type": "type", "validated": true, "ani": 75.4212, "matched_fragments": 158, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseoflavus", "strain": "strain=JCM 4479", "accession": "GCA_014649995.1", "taxid": 35619, "species_taxid": 35619, "relation_to_type": "type", "validated": true, "ani": 75.4102, "matched_fragments": 163, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces calvus", "strain": "strain=CECT 3271", "accession": "GCA_014138735.1", "taxid": 67282, "species_taxid": 67282, "relation_to_type": "type", "validated": true, "ani": 75.3526, "matched_fragments": 183, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia yuyongxinii", "strain": "strain=Z443", "accession": "GCA_006352065.1", "taxid": 2589797, "species_taxid": 2589797, "relation_to_type": "type", "validated": true, "ani": 75.3163, "matched_fragments": 136, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora fastidiosa", "strain": "strain=JCM 3276", "accession": "GCA_014648415.1", "taxid": 1816, "species_taxid": 1816, "relation_to_type": "type", "validated": true, "ani": 75.3144, "matched_fragments": 196, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces calvus", "strain": "strain=JCM 4326", "accession": "GCA_014649315.1", "taxid": 67282, "species_taxid": 67282, "relation_to_type": "type", "validated": true, "ani": 75.3086, "matched_fragments": 184, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora siamensis", "strain": "strain=NBRC 107568", "accession": "GCA_016863175.1", "taxid": 936338, "species_taxid": 936338, "relation_to_type": "type", "validated": true, "ani": 75.3027, "matched_fragments": 220, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces ferrugineus", "strain": "strain=CCTCC AA2014009", "accession": "GCA_015160855.1", "taxid": 1413221, "species_taxid": 1413221, "relation_to_type": "type", "validated": true, "ani": 75.297, "matched_fragments": 179, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mobilicoccus massiliensis", "strain": "strain=SIT2", "accession": "GCA_000826525.2", "taxid": 1522310, "species_taxid": 1522310, "relation_to_type": "type", "validated": true, "ani": 75.2954, "matched_fragments": 112, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia ammonioxydans", "strain": "strain=CGMCC 4.1877", "accession": "GCA_900115005.1", "taxid": 260086, "species_taxid": 260086, "relation_to_type": "type", "validated": true, "ani": 75.288, "matched_fragments": 227, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Williamsia deligens", "strain": "strain=DSM 44902", "accession": "GCA_024171765.1", "taxid": 321325, "species_taxid": 321325, "relation_to_type": "type", "validated": true, "ani": 75.2522, "matched_fragments": 124, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura cremea", "strain": "strain=JCM 3308", "accession": "GCA_014648495.1", "taxid": 1991, "species_taxid": 1991, "relation_to_type": "type", "validated": true, "ani": 75.2267, "matched_fragments": 220, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus spadix", "strain": "strain=KCTC 9252", "accession": "GCA_024055725.1", "taxid": 79912, "species_taxid": 79912, "relation_to_type": "type", "validated": true, "ani": 75.155, "matched_fragments": 213, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces binzhouensis", "strain": "strain=CGMCC 4.7180", "accession": "GCA_004135055.1", "taxid": 1817495, "species_taxid": 1817495, "relation_to_type": "type", "validated": true, "ani": 75.1523, "matched_fragments": 90, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces kandeliae", "strain": "strain=Q22", "accession": "GCA_009674665.1", "taxid": 2666141, "species_taxid": 2666141, "relation_to_type": "type", "validated": true, "ani": 74.9145, "matched_fragments": 123, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 93.06, "contamination": 2.15, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003962875.1", "gtdb_species": "s__AWTP1-35 sp003962875", "ani": 97.7664, "matched_fragments": 677, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__AWTP1-35", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_018268735.1", "gtdb_species": "s__AWTP1-35 sp018268735", "ani": 81.5419, "matched_fragments": 358, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__AWTP1-35", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903868545.1", "gtdb_species": "s__CAIPVR01 sp903868545", "ani": 79.4693, "matched_fragments": 415, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__CAIPVR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.51", "min_intra_species_ani": "99.50", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903941145.1", "gtdb_species": "s__CAJANQ01 sp903941145", "ani": 79.142, "matched_fragments": 281, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__CAJANQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "98.35", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903953195.1", "gtdb_species": "s__SXMI01 sp903953195", "ani": 78.8545, "matched_fragments": 318, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SXMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.58", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.80", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903930035.1", "gtdb_species": "s__CAJANQ01 sp903930035", "ani": 78.6892, "matched_fragments": 242, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__CAJANQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007118345.1", "gtdb_species": "s__SKRR01 sp007118345", "ani": 78.5418, "matched_fragments": 328, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SKRR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903852755.1", "gtdb_species": "s__SXMI01 sp903852755", "ani": 78.3412, "matched_fragments": 352, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SXMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.71", "min_intra_species_ani": "99.61", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_005777415.1", "gtdb_species": "s__SXMI01 sp005777415", "ani": 77.782, "matched_fragments": 261, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SXMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.41", "min_intra_species_ani": "99.40", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_019048865.1", "gtdb_species": "s__Aquihabitans sp019048865", "ani": 77.38, "matched_fragments": 356, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__Aquihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017577565.1", "gtdb_species": "s__ZC4RG19 sp017577565", "ani": 77.3129, "matched_fragments": 319, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JACDCH01;g__ZC4RG19", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009650215.1", "gtdb_species": "s__Actinomarinicola tropica", "ani": 77.2834, "matched_fragments": 291, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__SKKL01;g__Actinomarinicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016703525.1", "gtdb_species": "s__JADJBW01 sp016703525", "ani": 77.0558, "matched_fragments": 274, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__JADJBW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016719385.1", "gtdb_species": "s__Microthrix sp002473265", "ani": 77.0131, "matched_fragments": 237, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__Microthrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.46", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_014381945.1", "gtdb_species": "s__S20-B6 sp014381945", "ani": 76.6674, "matched_fragments": 153, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__S20-B6", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012841845.1", "gtdb_species": "s__Dietzia sp012841845", "ani": 75.7318, "matched_fragments": 86, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012034205.1", "gtdb_species": "s__Streptomyces sp012034205", "ani": 75.4004, "matched_fragments": 167, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002198655.1", "gtdb_species": "s__R-H-3 sp002198655", "ani": 75.1837, "matched_fragments": 261, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Kineosporiaceae;g__R-H-3", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__Microtrichaceae", "g__AWTP1-35", "s__AWTP1-35 sp003962875" ], "_genome_taxon": [ "Microthrixaceae", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__Microtrichaceae", "g__AWTP1-35", "s__AWTP1-35 sp003962875", "Bacteria", "Actinomycetota", "Acidimicrobiia", "Acidimicrobiales", "Microtrichaceae", "AWTP1-35", "AWTP1-35", "sp003962875" ], "_meo": [ { "id": "MEO_0000014", "label": "activated sludge" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }