{
    "type": "genome",
    "identifier": "GCA_020439505.1",
    "organism": "Acidimicrobiales bacterium",
    "title": "Acidimicrobiales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020439505.1",
        "bioproject": "PRJNA432264",
        "biosample": "SAMN14562759",
        "wgs_master": "JAGQSO000000000.1",
        "refseq_category": "na",
        "taxid": "2201156",
        "species_taxid": "2201156",
        "organism_name": "Acidimicrobiales bacterium",
        "infraspecific_name": "",
        "isolate": "HKST-UBA09",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/12",
        "asm_name": "ASM2043950v1",
        "submitter": "The University Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/439/505/GCA_020439505.1_ASM2043950v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-12",
    "dateModified": "2021-10-12",
    "datePublished": "2021-10-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acidimicrobiales bacterium"
        ],
        "sample_taxid": [
            "2201156"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hong Kong SAR, Shatin waste water treatment plant"
        ],
        "sample_host_location_id": [],
        "data_size": "0.936 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3404406",
        "Number of Sequences": "288",
        "Longest Sequences (bp)": "141218",
        "N50 (bp)": "25612",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.9",
        "Number of CDSs": "2876",
        "Average Protein Length": "321.6",
        "Coding Ratio (%)": "81.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rhabdothermincola salaria",
                "strain": "strain=EGI L10124",
                "accession": "GCA_021246445.1",
                "taxid": 2903142,
                "species_taxid": 2903142,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5842,
                "matched_fragments": 261,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomarinicola tropica",
                "strain": "strain=SCSIO 58843",
                "accession": "GCA_009650215.1",
                "taxid": 2789776,
                "species_taxid": 2789776,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3177,
                "matched_fragments": 221,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhabdothermincola sediminis",
                "strain": "strain=SYSU G02662",
                "accession": "GCA_014805525.1",
                "taxid": 2751370,
                "species_taxid": 2751370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0187,
                "matched_fragments": 188,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desertimonas flava",
                "strain": "strain=SYSU D60003",
                "accession": "GCA_003426815.1",
                "taxid": 2064846,
                "species_taxid": 2064846,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5924,
                "matched_fragments": 171,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ilumatobacter nonamiensis",
                "strain": "strain=YM16-303",
                "accession": "GCA_000350145.1",
                "taxid": 467093,
                "species_taxid": 467093,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4393,
                "matched_fragments": 93,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ilumatobacter coccineus",
                "strain": "strain=YM16-304",
                "accession": "GCA_000348785.1",
                "taxid": 467094,
                "species_taxid": 467094,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3133,
                "matched_fragments": 114,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arsenicicoccus dermatophilus",
                "strain": "strain=DSM 25571",
                "accession": "GCA_022568795.1",
                "taxid": 1076331,
                "species_taxid": 1076331,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9486,
                "matched_fragments": 72,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Motilibacter peucedani",
                "strain": "strain=RP-AC37",
                "accession": "GCA_003634695.1",
                "taxid": 598650,
                "species_taxid": 598650,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8587,
                "matched_fragments": 74,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudonocardia petroleophila",
                "strain": "strain=CGMCC 4.1532",
                "accession": "GCA_014235185.1",
                "taxid": 37331,
                "species_taxid": 37331,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6772,
                "matched_fragments": 122,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitriliruptor alkaliphilus",
                "strain": "strain=DSM 45188",
                "accession": "GCA_000969705.1",
                "taxid": 427918,
                "species_taxid": 427918,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6627,
                "matched_fragments": 99,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leucobacter chromiisoli",
                "strain": "strain=CSA1",
                "accession": "GCA_016522505.1",
                "taxid": 2796471,
                "species_taxid": 2796471,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6379,
                "matched_fragments": 56,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis alkalitolerans",
                "strain": "strain=SYSUP0005",
                "accession": "GCA_006152065.1",
                "taxid": 2547244,
                "species_taxid": 2547244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5262,
                "matched_fragments": 81,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia caishijiensis",
                "strain": "strain=NBRC 108228",
                "accession": "GCA_001612825.1",
                "taxid": 184756,
                "species_taxid": 184756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5111,
                "matched_fragments": 95,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia caishijiensis",
                "strain": "strain=DSM 44831",
                "accession": "GCA_009858255.1",
                "taxid": 184756,
                "species_taxid": 184756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5047,
                "matched_fragments": 93,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces smyrnaeus",
                "strain": "strain=DSM 42105",
                "accession": "GCA_017676345.1",
                "taxid": 1387713,
                "species_taxid": 1387713,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5015,
                "matched_fragments": 96,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea deserti",
                "strain": "strain=KC310",
                "accession": "GCA_004348685.1",
                "taxid": 1848322,
                "species_taxid": 1848322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4831,
                "matched_fragments": 123,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea diastatica",
                "strain": "strain=KC712",
                "accession": "GCA_004349015.1",
                "taxid": 1848329,
                "species_taxid": 1848329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4169,
                "matched_fragments": 127,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea ceibae",
                "strain": "strain=KCTC 39826",
                "accession": "GCA_019396325.1",
                "taxid": 1935170,
                "species_taxid": 1935170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3841,
                "matched_fragments": 133,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kineococcus xinjiangensis",
                "strain": "strain=DSM 22857",
                "accession": "GCA_002934625.1",
                "taxid": 512762,
                "species_taxid": 512762,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3824,
                "matched_fragments": 85,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia pseudobrasiliensis",
                "strain": "strain=NBRC 108224",
                "accession": "GCA_001613105.1",
                "taxid": 45979,
                "species_taxid": 45979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3635,
                "matched_fragments": 76,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016702505.1",
                "gtdb_species": "s__JAAZBK01 sp016702505",
                "ani": 82.6216,
                "matched_fragments": 660,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__JAAZBK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012513855.1",
                "gtdb_species": "s__JAAZBK01 sp012513855",
                "ani": 79.9566,
                "matched_fragments": 405,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__JAAZBK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_019048865.1",
                "gtdb_species": "s__Aquihabitans sp019048865",
                "ani": 79.2559,
                "matched_fragments": 448,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__Aquihabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012730075.1",
                "gtdb_species": "s__JAAYBP01 sp012730075",
                "ani": 77.5958,
                "matched_fragments": 227,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__JAAYBP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017882935.1",
                "gtdb_species": "s__JADGOP01 sp017882935",
                "ani": 77.5732,
                "matched_fragments": 177,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__JADGOP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018969405.1",
                "gtdb_species": "s__F1-20-MAGs160 sp018969405",
                "ani": 77.4236,
                "matched_fragments": 175,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8139;g__F1-20-MAGs160",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016185275.1",
                "gtdb_species": "s__JACPNX01 sp016185275",
                "ani": 77.4148,
                "matched_fragments": 229,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__JACPNX01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016781105.1",
                "gtdb_species": "s__JADDRA01 sp016781105",
                "ani": 77.2157,
                "matched_fragments": 127,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__CADCSY01;g__JADDRA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.25",
                "min_intra_species_ani": "99.25",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017577565.1",
                "gtdb_species": "s__ZC4RG19 sp017577565",
                "ani": 77.1912,
                "matched_fragments": 236,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JACDCH01;g__ZC4RG19",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016185305.1",
                "gtdb_species": "s__JACPNV01 sp016185305",
                "ani": 77.1644,
                "matched_fragments": 108,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8139;g__JACPNV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016845305.1",
                "gtdb_species": "s__UBA9410 sp016845305",
                "ani": 77.1343,
                "matched_fragments": 159,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__UBA9410",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016781225.1",
                "gtdb_species": "s__YB1-3 sp016781225",
                "ani": 76.985,
                "matched_fragments": 66,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__GCA-2861595;g__YB1-3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016716005.1",
                "gtdb_species": "s__JADJXE01 sp016716005",
                "ani": 76.9288,
                "matched_fragments": 214,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JADJXE01;g__JADJXE01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903852755.1",
                "gtdb_species": "s__SXMI01 sp903852755",
                "ani": 76.8545,
                "matched_fragments": 153,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SXMI01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.71",
                "min_intra_species_ani": "99.61",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 10,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.35,
        "cell_length": 0.194,
        "doubling_h": null,
        "growth_tmp": 34.166,
        "optimum_tmp": 34.25,
        "optimum_ph": 4.45,
        "genome_size": 2693748.75,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.2,
        "sporulation": 0.0,
        "motility": 0.25,
        "range_salinity": null,
        "facultative_respiration": 0.25,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.75,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__Acidimicrobiales",
        "f__Iamiaceae",
        "g__JAAZBK01",
        "s__JAAZBK01 sp020439505"
    ],
    "_genome_taxon": [
        "Acidimicrobiales",
        "bacterium",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__Acidimicrobiales",
        "f__Iamiaceae",
        "g__JAAZBK01",
        "s__JAAZBK01 sp020439505",
        "Bacteria",
        "Actinomycetota",
        "Acidimicrobiia",
        "Acidimicrobiales",
        "Iamiaceae",
        "JAAZBK01",
        "JAAZBK01",
        "sp020439505"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}