{
    "type": "genome",
    "identifier": "GCA_020440935.1",
    "organism": "Leptospiraceae bacterium",
    "title": "Leptospiraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020440935.1",
        "bioproject": "PRJNA432264",
        "biosample": "SAMN14564417",
        "wgs_master": "JAGRNC000000000.1",
        "refseq_category": "na",
        "taxid": "2026757",
        "species_taxid": "2026757",
        "organism_name": "Leptospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "HKST-UBA07",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/12",
        "asm_name": "ASM2044093v1",
        "submitter": "The University Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/440/935/GCA_020440935.1_ASM2044093v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-12",
    "dateModified": "2021-10-12",
    "datePublished": "2021-10-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leptospiraceae bacterium"
        ],
        "sample_taxid": [
            "2026757"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hong Kong SAR, Shatin waste water treatment plant"
        ],
        "sample_host_location_id": [],
        "data_size": "1.069 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 81.02,
        "contamination": 5.09,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3660555",
        "Number of Sequences": "930",
        "Longest Sequences (bp)": "24987",
        "N50 (bp)": "5457",
        "Gap Ratio (%)": "0.004589",
        "GCcontent (%)": "51.7",
        "Number of CDSs": "2613",
        "Average Protein Length": "293.5",
        "Coding Ratio (%)": "62.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "15",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 81.02,
            "contamination": 5.09,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002729885.1",
                "gtdb_species": "s__UBA3465 sp002729885",
                "ani": 77.387,
                "matched_fragments": 156,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptonemataceae;g__UBA3465",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.92",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002730875.1",
                "gtdb_species": "s__UBA3465 sp002730875",
                "ani": 77.3069,
                "matched_fragments": 158,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptonemataceae;g__UBA3465",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_002717505.1",
                "gtdb_species": "s__UBA3465 sp002717505",
                "ani": 77.1734,
                "matched_fragments": 121,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptonemataceae;g__UBA3465",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.8,
        "cell_length": 0.954,
        "doubling_h": 1.009,
        "growth_tmp": 29.8,
        "optimum_tmp": 30.196,
        "optimum_ph": 7.4,
        "genome_size": 4316749.451,
        "gc_content": 40.782,
        "coding_genes": 3780.503,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 36.881,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.166,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.833
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Leptospirae",
        "o__Leptospirales",
        "f__Leptonemataceae",
        "g__UBA3465",
        "s__UBA3465 sp020440935"
    ],
    "_genome_taxon": [
        "Leptospiraceae",
        "bacterium",
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Leptospirae",
        "o__Leptospirales",
        "f__Leptonemataceae",
        "g__UBA3465",
        "s__UBA3465 sp020440935",
        "Bacteria",
        "Spirochaetota",
        "Leptospirae",
        "Leptospirales",
        "Leptonemataceae",
        "UBA3465",
        "UBA3465",
        "sp020440935"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}