{ "type": "genome", "identifier": "GCA_020441285.1", "organism": "Paracoccaceae bacterium", "title": "Paracoccaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020441285.1", "bioproject": "PRJNA432264", "biosample": "SAMN14564401", "wgs_master": "JAGRMM000000000.1", "refseq_category": "na", "taxid": "1904441", "species_taxid": "1904441", "organism_name": "Paracoccaceae bacterium", "infraspecific_name": "", "isolate": "HKST-UBA91", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/12", "asm_name": "ASM2044128v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/441/285/GCA_020441285.1_ASM2044128v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-12", "dateModified": "2021-10-12", "datePublished": "2021-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccaceae bacterium" ], "sample_taxid": [ "1904441" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "0.876 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 33.33, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3221850", "Number of Sequences": "735", "Longest Sequences (bp)": "27093", "N50 (bp)": "6834", "Gap Ratio (%)": "2.044788", "GCcontent (%)": "67.2", "Number of CDSs": "2582", "Average Protein Length": "272.7", "Coding Ratio (%)": "65.6", "Number of rRNAs": "0", "Number of tRNAs": "23", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pararhodobacter aggregans", "strain": "strain=DSM 18938", "accession": "GCA_003054005.1", "taxid": 404875, "species_taxid": 404875, "relation_to_type": "type", "validated": true, "ani": 80.6469, "matched_fragments": 489, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodobacter aggregans", "strain": "strain=D1-19", "accession": "GCA_003075525.1", "taxid": 404875, "species_taxid": 404875, "relation_to_type": "type", "validated": true, "ani": 80.643, "matched_fragments": 489, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodobacter marinus", "strain": "strain=CIC4N-9", "accession": "GCA_003122215.1", "taxid": 2184063, "species_taxid": 2184063, "relation_to_type": "type", "validated": true, "ani": 79.9238, "matched_fragments": 450, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodobacter zhoushanensis", "strain": "strain=ZQ420", "accession": "GCA_003990445.1", "taxid": 2479545, "species_taxid": 2479545, "relation_to_type": "type", "validated": true, "ani": 79.7076, "matched_fragments": 443, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allgaiera indica", "strain": "strain=CGMCC 1.10859", "accession": "GCA_014653075.1", "taxid": 765699, "species_taxid": 765699, "relation_to_type": "type", "validated": true, "ani": 77.2732, "matched_fragments": 204, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allgaiera indica", "strain": "strain=DSM 24802", "accession": "GCA_900106675.1", "taxid": 765699, "species_taxid": 765699, "relation_to_type": "type", "validated": true, "ani": 77.2251, "matched_fragments": 203, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus solventivorans", "strain": "strain=DSM 6637", "accession": "GCA_900142875.1", "taxid": 53463, "species_taxid": 53463, "relation_to_type": "type", "validated": true, "ani": 77.1942, "matched_fragments": 168, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdonatronobacter sediminivivens", "strain": "strain=IM2376", "accession": "GCA_013415485.1", "taxid": 2743469, "species_taxid": 2743469, "relation_to_type": "type", "validated": true, "ani": 77.1925, "matched_fragments": 195, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum visakhapatnamense", "strain": "strain=JA181", "accession": "GCA_004365965.1", "taxid": 364297, "species_taxid": 364297, "relation_to_type": "type", "validated": true, "ani": 77.0747, "matched_fragments": 206, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 77.0539, "matched_fragments": 143, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=JA123", "accession": "GCA_900217755.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 77.0014, "matched_fragments": 211, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 76.9807, "matched_fragments": 183, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 76.9684, "matched_fragments": 183, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus salipaludis", "strain": "strain=WN007", "accession": "GCA_002287065.1", "taxid": 2032623, "species_taxid": 2032623, "relation_to_type": "type", "validated": true, "ani": 76.8767, "matched_fragments": 155, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum sulfidophilum", "strain": "strain=DSM 1374", "accession": "GCA_001633165.1", "taxid": 35806, "species_taxid": 35806, "relation_to_type": "type", "validated": true, "ani": 76.8765, 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