{
    "type": "genome",
    "identifier": "GCA_020441585.1",
    "organism": "Alphaproteobacteria bacterium",
    "title": "Alphaproteobacteria bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020441585.1",
        "bioproject": "PRJNA432264",
        "biosample": "SAMN14564387",
        "wgs_master": "JAGRLY000000000.1",
        "refseq_category": "na",
        "taxid": "1913988",
        "species_taxid": "1913988",
        "organism_name": "Alphaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "HKST-UBA77",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/12",
        "asm_name": "ASM2044158v1",
        "submitter": "The University Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/441/585/GCA_020441585.1_ASM2044158v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-12",
    "dateModified": "2021-10-12",
    "datePublished": "2021-10-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alphaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "1913988"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hong Kong SAR, Shatin waste water treatment plant"
        ],
        "sample_host_location_id": [],
        "data_size": "1.158 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 54.77,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4030091",
        "Number of Sequences": "1296",
        "Longest Sequences (bp)": "34319",
        "N50 (bp)": "5397",
        "Gap Ratio (%)": "0.685940",
        "GCcontent (%)": "61.8",
        "Number of CDSs": "2935",
        "Average Protein Length": "286.0",
        "Coding Ratio (%)": "62.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aestuariivirga litoralis",
                "strain": "strain=KCTC 52945",
                "accession": "GCA_003234965.1",
                "taxid": 2650924,
                "species_taxid": 2650924,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0032,
                "matched_fragments": 312,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zhengella mangrovi",
                "strain": "strain=X9-2-2",
                "accession": "GCA_002727065.1",
                "taxid": 1982044,
                "species_taxid": 1982044,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7346,
                "matched_fragments": 56,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chelatococcus caeni",
                "strain": "strain=DSM 103737",
                "accession": "GCA_014196925.1",
                "taxid": 1348468,
                "species_taxid": 1348468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5857,
                "matched_fragments": 80,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microvirga lotononidis",
                "strain": "strain=WSM3557",
                "accession": "GCA_000262405.1",
                "taxid": 864069,
                "species_taxid": 864069,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4005,
                "matched_fragments": 50,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 54.77,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003234965.1",
                "gtdb_species": "s__Aestuariivirga litoralis",
                "ani": 79.0032,
                "matched_fragments": 312,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Aestuariivirgaceae;g__Aestuariivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903930095.1",
                "gtdb_species": "s__Aestuariivirga sp903930095",
                "ani": 78.5403,
                "matched_fragments": 211,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Aestuariivirgaceae;g__Aestuariivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016595235.1",
                "gtdb_species": "s__Nordella sp016595235",
                "ani": 77.6376,
                "matched_fragments": 176,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Aestuariivirgaceae;g__Nordella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016185245.1",
                "gtdb_species": "s__Aestuariivirga sp016185245",
                "ani": 77.5411,
                "matched_fragments": 211,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Aestuariivirgaceae;g__Aestuariivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.81",
                "min_intra_species_ani": "99.81",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003576695.1",
                "gtdb_species": "s__Nordella sp003576695",
                "ani": 77.1358,
                "matched_fragments": 205,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Aestuariivirgaceae;g__Nordella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016792865.1",
                "gtdb_species": "s__Aestuariivirga sp016792865",
                "ani": 77.0446,
                "matched_fragments": 128,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Aestuariivirgaceae;g__Aestuariivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011046735.1",
                "gtdb_species": "s__Nordella sp011046735",
                "ani": 76.8512,
                "matched_fragments": 156,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Aestuariivirgaceae;g__Nordella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018242205.1",
                "gtdb_species": "s__Pseudolabrys sp018242205",
                "ani": 75.8299,
                "matched_fragments": 52,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Aestuariivirgaceae",
        "g__Aestuariivirga",
        "s__"
    ],
    "_genome_taxon": [
        "Alphaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Aestuariivirgaceae",
        "g__Aestuariivirga",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhizobiales",
        "Aestuariivirgaceae",
        "Aestuariivirga",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}