{ "type": "genome", "identifier": "GCA_020441805.1", "organism": "Rhizobiaceae bacterium", "title": "Rhizobiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020441805.1", "bioproject": "PRJNA432264", "biosample": "SAMN14564372", "wgs_master": "JAGRLJ000000000.1", "refseq_category": "na", "taxid": "1913961", "species_taxid": "1913961", "organism_name": "Rhizobiaceae bacterium", "infraspecific_name": "", "isolate": "HKST-UBA62", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/12", "asm_name": "ASM2044180v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/441/805/GCA_020441805.1_ASM2044180v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-12", "dateModified": "2021-10-12", "datePublished": "2021-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhizobiaceae bacterium" ], "sample_taxid": [ "1913961" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "1.182 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 46.35, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4286604", "Number of Sequences": "465", "Longest Sequences (bp)": "64308", "N50 (bp)": "14332", "Gap Ratio (%)": "0.434283", "GCcontent (%)": "64.8", "Number of CDSs": "3782", "Average Protein Length": "293.5", "Coding Ratio (%)": "77.7", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 79.0598, "matched_fragments": 510, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella granuli", "strain": "strain=DSM 18401", "accession": "GCA_004341885.1", "taxid": 323621, "species_taxid": 323621, "relation_to_type": "type", "validated": true, "ani": 78.8812, "matched_fragments": 556, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella fusca", "strain": "strain=DSM 21319", "accession": "GCA_014203155.1", "taxid": 544480, "species_taxid": 544480, "relation_to_type": "type", "validated": true, "ani": 78.8328, "matched_fragments": 509, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella yambaruensis", "strain": "strain=DSM 18801", "accession": "GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 78.7922, "matched_fragments": 545, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer sesbaniae", "strain": "strain=CCBAU 65729", "accession": "GCA_013283665.1", "taxid": 1214071, "species_taxid": 1214071, "relation_to_type": "type", "validated": true, "ani": 78.0926, "matched_fragments": 381, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=USDA 205", "accession": "GCA_001461695.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 78.0909, "matched_fragments": 394, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium hidalgonense", "strain": "strain=FH14", "accession": "GCA_002531855.1", "taxid": 1538159, "species_taxid": 1538159, "relation_to_type": "type", "validated": true, "ani": 78.0763, "matched_fragments": 387, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium hidalgonense", "strain": "strain=FH14", "accession": "GCA_002914525.1", "taxid": 1538159, "species_taxid": 1538159, "relation_to_type": "type", "validated": true, "ani": 78.0728, "matched_fragments": 388, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=USDA205", "accession": "GCA_009601405.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 78.0705, "matched_fragments": 404, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium phaseoli", "strain": "strain=ATCC 14482", "accession": "GCA_003985125.1", "taxid": 396, "species_taxid": 396, "relation_to_type": "type", "validated": true, "ani": 78.0696, "matched_fragments": 386, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium esperanzae", "strain": "strain=CNPSo 668", "accession": "GCA_002204185.1", "taxid": 1967781, "species_taxid": 1967781, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0451, "matched_fragments": 387, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium subbaraonis", "strain": "strain=JC85", "accession": "GCA_900220975.1", "taxid": 908946, "species_taxid": 908946, "relation_to_type": "type", "validated": true, "ani": 77.9918, "matched_fragments": 412, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=NBRC 14780", "accession": "GCA_006539605.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 77.973, "matched_fragments": 409, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium rhizolycopersici", "strain": "strain=DBTS2", "accession": "GCA_013378445.1", "taxid": 2746702, "species_taxid": 2746702, "relation_to_type": "type", "validated": true, "ani": 77.9048, "matched_fragments": 390, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium vignae", "strain": "strain=CCBAU 05176", "accession": "GCA_000732195.1", "taxid": 690585, "species_taxid": 690585, "relation_to_type": "type", "validated": true, "ani": 77.8299, "matched_fragments": 372, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter ferrooxidans", "strain": "strain=F8825", "accession": "GCA_004137355.1", "taxid": 2509717, "species_taxid": 2509717, "relation_to_type": "type", "validated": true, "ani": 77.6985, "matched_fragments": 321, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter thiooxidans", "strain": "strain=F43B", "accession": "GCA_014126615.1", "taxid": 1969821, "species_taxid": 1969821, "relation_to_type": "type", "validated": true, "ani": 77.6466, "matched_fragments": 323, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter lividus", "strain": "strain=DSM 25528", "accession": "GCA_003337715.1", "taxid": 1197950, "species_taxid": 1197950, "relation_to_type": "type", "validated": true, "ani": 77.587, "matched_fragments": 332, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer sojae", "strain": "strain=CCBAU 05684", "accession": "GCA_000261485.1", "taxid": 716925, "species_taxid": 716925, "relation_to_type": "type", "validated": true, "ani": 77.5685, "matched_fragments": 334, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium petrolearium", "strain": "strain=DSM 26482", "accession": "GCA_017873175.1", "taxid": 515361, "species_taxid": 515361, "relation_to_type": "type", "validated": true, "ani": 77.5256, "matched_fragments": 326, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium alkalisoli", "strain": "strain=DSM 21826", "accession": "GCA_002968635.1", "taxid": 528178, "species_taxid": 528178, "relation_to_type": "type", "validated": true, "ani": 77.5008, "matched_fragments": 326, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium populisoli", "strain": "strain=XQZ8", "accession": "GCA_019430945.1", "taxid": 2859785, "species_taxid": 2859785, "relation_to_type": "type", "validated": true, "ani": 77.4869, "matched_fragments": 353, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhizobium banfieldiae", "strain": "strain=NT-26", "accession": "GCA_000967425.1", "taxid": 1125847, "species_taxid": 1125847, "relation_to_type": "type", "validated": true, "ani": 77.1629, "matched_fragments": 229, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium microcysteis", "strain": "strain=NIBR3", "accession": "GCA_014495845.1", "taxid": 675281, "species_taxid": 675281, "relation_to_type": "type", "validated": true, "ani": 77.1261, "matched_fragments": 342, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium carbonis", "strain": "strain=B2.3", "accession": "GCA_003970795.1", "taxid": 2495581, "species_taxid": 2495581, "relation_to_type": "type", "validated": true, "ani": 77.0376, "matched_fragments": 290, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella sonneratiae", "strain": "strain=MQZ13P-4", "accession": "GCA_017353515.1", "taxid": 2816856, "species_taxid": 2816856, "relation_to_type": "type", "validated": true, "ani": 76.64, "matched_fragments": 255, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella endophytica", "strain": "strain=CBS5Q-3", "accession": "GCA_004519335.1", "taxid": 2558362, "species_taxid": 2558362, "relation_to_type": "type", "validated": true, "ani": 76.3811, "matched_fragments": 233, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas aggregata", "strain": "strain=KCTC 52919", "accession": "GCA_010500835.1", "taxid": 2047720, "species_taxid": 2047720, "relation_to_type": "type", "validated": true, "ani": 76.2887, "matched_fragments": 245, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea thiooxidans", "strain": "strain=DSM 9653", "accession": "GCA_900168195.1", "taxid": 53254, "species_taxid": 53254, "relation_to_type": "type", "validated": true, "ani": 76.1891, "matched_fragments": 216, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salaquimonas pukyongi", "strain": "strain=RR3-28", "accession": "GCA_001953055.1", "taxid": 2712698, "species_taxid": 2712698, "relation_to_type": "type", "validated": true, "ani": 75.8482, "matched_fragments": 82, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 46.35, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014158035.1", "gtdb_species": "s__FKL33 sp014158035", "ani": 79.4317, "matched_fragments": 576, "total_fragments": 1179, "gtdb_taxonomy": 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