{
    "type": "genome",
    "identifier": "GCA_020442085.1",
    "organism": "Hyphomicrobiaceae bacterium",
    "title": "Hyphomicrobiaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020442085.1",
        "bioproject": "PRJNA432264",
        "biosample": "SAMN14564360",
        "wgs_master": "JAGRKX000000000.1",
        "refseq_category": "na",
        "taxid": "2015799",
        "species_taxid": "2015799",
        "organism_name": "Hyphomicrobiaceae bacterium",
        "infraspecific_name": "",
        "isolate": "HKST-UBA50",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/12",
        "asm_name": "ASM2044208v1",
        "submitter": "The University Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/442/085/GCA_020442085.1_ASM2044208v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-12",
    "dateModified": "2021-10-12",
    "datePublished": "2021-10-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Hyphomicrobiaceae bacterium"
        ],
        "sample_taxid": [
            "2015799"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hong Kong SAR, Shatin waste water treatment plant"
        ],
        "sample_host_location_id": [],
        "data_size": "0.719 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 25.96,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2514235",
        "Number of Sequences": "414",
        "Longest Sequences (bp)": "31402",
        "N50 (bp)": "7792",
        "Gap Ratio (%)": "0.159293",
        "GCcontent (%)": "59.5",
        "Number of CDSs": "2062",
        "Average Protein Length": "281.0",
        "Coding Ratio (%)": "69.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "17",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Hyphomicrobium facile",
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                "accession": "GCA_900116175.1",
                "taxid": 51670,
                "species_taxid": 51670,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 67,
                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hyphomicrobium denitrificans",
                "strain": "strain=ATCC 51888",
                "accession": "GCA_000143145.1",
                "taxid": 53399,
                "species_taxid": 53399,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6024,
                "matched_fragments": 80,
                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 25.96,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016793445.1",
                "gtdb_species": "s__Hyphomicrobium sp016793445",
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                "matched_fragments": 313,
                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900116175.1",
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                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003987725.1",
                "gtdb_species": "s__Hyphomicrobium sp003987725",
                "ani": 76.8406,
                "matched_fragments": 72,
                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.09",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018242295.1",
                "gtdb_species": "s__Hyphomicrobium sp018242295",
                "ani": 76.8236,
                "matched_fragments": 71,
                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.15",
                "min_intra_species_ani": "97.15",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000384335.2",
                "gtdb_species": "s__Hyphomicrobium sp000384335",
                "ani": 76.751,
                "matched_fragments": 65,
                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003987855.1",
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                "matched_fragments": 51,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013141015.1",
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                "matched_fragments": 89,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000253295.1",
                "gtdb_species": "s__Hyphomicrobium sp000253295",
                "ani": 76.6085,
                "matched_fragments": 82,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium",
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                "mean_intra_species_ani": "99.46",
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                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_000143145.1",
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                "total_fragments": 620,
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                "mean_intra_species_ani": "95.20",
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                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000383415.1",
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                "matched_fragments": 70,
                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium",
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                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018242255.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.162,
        "cell_length": 0.227,
        "doubling_h": null,
        "growth_tmp": 28.511,
        "optimum_tmp": 29.342,
        "optimum_ph": 7.344,
        "genome_size": 4094362.09,
        "gc_content": 60.93,
        "coding_genes": 3558.106,
        "rRNA16S_genes": 1.75,
        "tRNA_genes": 46.266,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.92,
        "range_salinity": 0.0,
        "facultative_respiration": 0.125,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.875,
        "mesophilic_range_tmp": 0.666,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.333,
        "bacillus_cell_shape": 0.916,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.083,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Hyphomicrobiaceae",
        "g__Hyphomicrobium_B",
        "s__"
    ],
    "_genome_taxon": [
        "Hyphomicrobiaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Hyphomicrobiaceae",
        "g__Hyphomicrobium_B",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhizobiales",
        "Hyphomicrobiaceae",
        "Hyphomicrobium",
        "B",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}