{ "type": "genome", "identifier": "GCA_020442305.1", "organism": "Rhodoblastus sp.", "title": "Rhodoblastus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020442305.1", "bioproject": "PRJNA432264", "biosample": "SAMN14564351", "wgs_master": "JAGRKO000000000.1", "refseq_category": "na", "taxid": "1962975", "species_taxid": "1962975", "organism_name": "Rhodoblastus sp.", "infraspecific_name": "", "isolate": "HKST-UBA41", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/12", "asm_name": "ASM2044230v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/442/305/GCA_020442305.1_ASM2044230v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-12", "dateModified": "2021-10-12", "datePublished": "2021-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodoblastus sp." ], "sample_taxid": [ "1962975" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "0.925 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 45.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3350846", "Number of Sequences": "634", "Longest Sequences (bp)": "46427", "N50 (bp)": "6842", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.7", "Number of CDSs": "2695", "Average Protein Length": "289.1", "Coding Ratio (%)": "69.8", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Candidatus Rhodoblastus alkanivorans", "strain": "", "accession": "GCA_022760755.1", "taxid": 2954117, "species_taxid": 2954117, "relation_to_type": "type", "validated": true, "ani": 77.2342, "matched_fragments": 187, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 77.1016, "matched_fragments": 212, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylosinus trichosporium", "strain": "strain=OB3b", "accession": 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95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 76.8408, "matched_fragments": 192, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylocystis hirsuta", "strain": "strain=CSC1", "accession": "GCA_003722355.1", "taxid": 369798, "species_taxid": 369798, "relation_to_type": "type", "validated": true, "ani": 76.8364, "matched_fragments": 164, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylocystis rosea", "strain": "strain=SV97", "accession": "GCA_000372845.1", "taxid": 173366, "species_taxid": 173366, "relation_to_type": "type", "validated": true, "ani": 76.8012, "matched_fragments": 146, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium 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