{ "type": "genome", "identifier": "GCA_020442465.1", "organism": "Xanthomonadales bacterium", "title": "Xanthomonadales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020442465.1", "bioproject": "PRJNA432264", "biosample": "SAMN14564335", "wgs_master": "JAGRJY000000000.1", "refseq_category": "na", "taxid": "2006849", "species_taxid": "2006849", "organism_name": "Xanthomonadales bacterium", "infraspecific_name": "", "isolate": "HKST-UBA257", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/12", "asm_name": "ASM2044246v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/442/465/GCA_020442465.1_ASM2044246v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-12", "dateModified": "2021-10-12", "datePublished": "2021-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Xanthomonadales bacterium" ], "sample_taxid": [ "2006849" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "1.164 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4234315", "Number of Sequences": "187", "Longest Sequences (bp)": "427312", "N50 (bp)": "82620", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.0", "Number of CDSs": "3369", "Average Protein Length": "355.7", "Coding Ratio (%)": "84.9", "Number of rRNAs": "0", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermomonas aquatica", "strain": "strain=SY21", "accession": "GCA_006337105.1", "taxid": 2202149, "species_taxid": 2202149, "relation_to_type": "type", "validated": true, "ani": 78.4759, "matched_fragments": 323, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=DSM 18010", "accession": "GCA_000426365.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 78.4244, "matched_fragments": 382, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas metalli", "strain": "strain=CF5-1", "accession": "GCA_000747155.1", "taxid": 948077, "species_taxid": 948077, "relation_to_type": "type", "validated": true, "ani": 78.4146, "matched_fragments": 379, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=TR7-09", "accession": "GCA_000747175.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 78.3839, "matched_fragments": 376, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas weifangensis", "strain": "strain=WF-2", "accession": "GCA_003416885.1", "taxid": 2303539, "species_taxid": 2303539, "relation_to_type": "type", "validated": true, "ani": 78.3701, "matched_fragments": 316, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=YIM 77520", "accession": "GCA_008033455.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 78.3241, "matched_fragments": 367, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium thermophilum", "strain": "strain=KCTC 32020", "accession": "GCA_007923255.1", "taxid": 1169913, "species_taxid": 1169913, "relation_to_type": "type", "validated": true, "ani": 78.2911, "matched_fragments": 354, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomarimonas arenosa", "strain": "strain=CAU 1598", "accession": "GCA_014841215.1", "taxid": 2774145, "species_taxid": 2774145, "relation_to_type": "type", "validated": true, "ani": 78.2853, "matched_fragments": 417, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=DSM 25623", "accession": "GCA_003814555.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 78.2841, "matched_fragments": 374, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas colneyensis", "strain": "strain=Sa2BVA3", "accession": "GCA_014836665.1", "taxid": 2762230, "species_taxid": 2762230, "relation_to_type": "type", "validated": true, "ani": 78.2796, "matched_fragments": 317, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium thermophilum", "strain": "strain=KCTC 32020", "accession": "GCA_014656335.1", "taxid": 1169913, "species_taxid": 1169913, "relation_to_type": "type", "validated": true, "ani": 78.27, "matched_fragments": 354, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas granuli", "strain": "strain=Gr-4", "accession": "GCA_007795095.1", "taxid": 1176533, "species_taxid": 1176533, "relation_to_type": "type", "validated": true, "ani": 78.2689, "matched_fragments": 292, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas koreensis", "strain": "strain=KCTC 12208", "accession": "GCA_010093225.1", "taxid": 266061, "species_taxid": 266061, "relation_to_type": "type", "validated": true, "ani": 78.2458, "matched_fragments": 327, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter maris", "strain": "strain=KCTC 42381", "accession": "GCA_006546735.2", "taxid": 1605891, "species_taxid": 1605891, "relation_to_type": "type", "validated": true, "ani": 78.1213, "matched_fragments": 343, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter panacisoli", "strain": "strain=JCM 19212", "accession": "GCA_009765165.1", "taxid": 1255263, "species_taxid": 1255263, "relation_to_type": "type", "validated": true, "ani": 78.1111, "matched_fragments": 344, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 78.0542, "matched_fragments": 293, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 78.0453, "matched_fragments": 287, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas suwonensis", "strain": "strain=DSM 17175", "accession": "GCA_010093235.1", "taxid": 314722, "species_taxid": 314722, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0222, "matched_fragments": 317, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas taiwanensis", "strain": "strain=DSM 22914", "accession": "GCA_010093135.1", "taxid": 176598, "species_taxid": 176598, "relation_to_type": "type", "validated": true, "ani": 78.0196, "matched_fragments": 318, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter chinensis", "strain": "strain=TLK-CK17", "accession": "GCA_021725675.1", "taxid": 2912247, "species_taxid": 2912247, "relation_to_type": "type", "validated": true, "ani": 77.972, "matched_fragments": 349, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 77.7907, "matched_fragments": 304, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=DSM 14263", "accession": "GCA_003148905.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 77.7674, "matched_fragments": 322, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter capsici", "strain": "strain=VKM B-2533", "accession": "GCA_014779555.2", "taxid": 435897, "species_taxid": 435897, "relation_to_type": "type", "validated": true, "ani": 77.745, "matched_fragments": 369, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella fugitiva", "strain": "strain=A3", "accession": "GCA_004342425.1", "taxid": 328517, "species_taxid": 328517, "relation_to_type": "type", "validated": true, "ani": 77.6258, "matched_fragments": 309, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tahibacter caeni", "strain": "strain=BUT-6", "accession": "GCA_024609805.1", "taxid": 1453545, "species_taxid": 1453545, "relation_to_type": "type", "validated": true, "ani": 77.5947, "matched_fragments": 361, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas massiliensis", "strain": "strain=SN8", "accession": "GCA_900018785.1", "taxid": 1720302, "species_taxid": 1720302, "relation_to_type": "type", "validated": true, "ani": 77.5849, "matched_fragments": 312, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas salinisoli", "strain": "strain=SJ-92", "accession": "GCA_013425525.1", "taxid": 2752307, "species_taxid": 2752307, "relation_to_type": "type", "validated": true, "ani": 77.5835, "matched_fragments": 362, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella koreensis", "strain": "strain=DS-123", "accession": "GCA_001632775.1", "taxid": 323415, "species_taxid": 323415, "relation_to_type": "type", "validated": true, "ani": 77.3976, "matched_fragments": 347, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter yeojuensis", "strain": "strain=DSM 17673", "accession": "GCA_011742875.1", "taxid": 345309, "species_taxid": 345309, "relation_to_type": "type", "validated": true, "ani": 77.3617, "matched_fragments": 206, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudolysobacter antarcticus", "strain": "strain=AQ6-296", "accession": "GCA_004168365.1", "taxid": 2511995, "species_taxid": 2511995, "relation_to_type": "type", "validated": true, "ani": 76.3225, "matched_fragments": 142, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014202935.1", "gtdb_species": "s__Rehaibacterium terrae", "ani": 78.7229, "matched_fragments": 391, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Rehaibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005502915.1", "gtdb_species": "s__SCMT01 sp005502915", "ani": 78.4223, "matched_fragments": 361, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__SCMT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000747155.1", "gtdb_species": "s__Arenimonas metalli", "ani": 78.4195, "matched_fragments": 378, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014489475.1", "gtdb_species": "s__Lysobacter solisilvae", "ani": 78.3073, "matched_fragments": 347, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900101825.1", "gtdb_species": "s__Aquimonas voraii", "ani": 78.2944, "matched_fragments": 384, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Aquimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014836665.1", "gtdb_species": "s__Luteimonas sp014836665", "ani": 78.2878, "matched_fragments": 317, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003814555.1", "gtdb_species": "s__Lysobacter tengchongensis", "ani": 78.2834, "matched_fragments": 374, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007923255.1", "gtdb_species": "s__Lysobacter thermophilus", "ani": 78.28, "matched_fragments": 355, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014841215.1", "gtdb_species": "s__CAU-1598 sp014841215", "ani": 78.2764, "matched_fragments": 418, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__CAU-1598", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010093225.1", "gtdb_species": "s__Pseudoxanthomonas koreensis", "ani": 78.2207, "matched_fragments": 328, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017302095.1", "gtdb_species": "s__Thermomonas sp017302095", "ani": 78.1353, "matched_fragments": 224, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Thermomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016615955.1", "gtdb_species": "s__Luteimonas sp016615955", "ani": 78.1178, "matched_fragments": 306, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.39", "min_intra_species_ani": "98.78", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_006542425.1", "gtdb_species": "s__Pseudoxanthomonas_A sp006542425", "ani": 78.1081, "matched_fragments": 310, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014654535.1", "gtdb_species": "s__Pseudomonas_S boreopolis", "ani": 78.0974, "matched_fragments": 323, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudomonas_S", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "98.68", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000953855.2", "gtdb_species": "s__Mizugakiibacter sediminis", "ani": 78.0906, "matched_fragments": 347, "total_fragments": 1311, "gtdb_taxonomy": 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