{ "type": "genome", "identifier": "GCA_020442545.1", "organism": "Xanthomonadales bacterium", "title": "Xanthomonadales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020442545.1", "bioproject": "PRJNA432264", "biosample": "SAMN14564334", "wgs_master": "JAGRJX000000000.1", "refseq_category": "na", "taxid": "2006849", "species_taxid": "2006849", "organism_name": "Xanthomonadales bacterium", "infraspecific_name": "", "isolate": "HKST-UBA256", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/12", "asm_name": "ASM2044254v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/442/545/GCA_020442545.1_ASM2044254v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-12", "dateModified": "2021-10-12", "datePublished": "2021-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Xanthomonadales bacterium" ], "sample_taxid": [ "2006849" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "0.730 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 59.03, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2630173", "Number of Sequences": "393", "Longest Sequences (bp)": "48511", "N50 (bp)": "9467", "Gap Ratio (%)": "0.208275", "GCcontent (%)": "64.8", "Number of CDSs": "1950", "Average Protein Length": "330.8", "Coding Ratio (%)": "73.6", "Number of rRNAs": "0", "Number of tRNAs": "24", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Luteimonas weifangensis", "strain": "strain=WF-2", "accession": "GCA_003416885.1", "taxid": 2303539, "species_taxid": 2303539, "relation_to_type": "type", "validated": true, "ani": 77.5255, "matched_fragments": 181, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter aestuarii", "strain": "strain=JCM 31130", "accession": "GCA_006546775.1", "taxid": 1706195, "species_taxid": 1706195, "relation_to_type": "type", "validated": true, "ani": 77.4715, "matched_fragments": 155, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, "relation_to_type": "type", "validated": true, "ani": 77.4249, "matched_fragments": 170, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas kaohsiungensis", "strain": "strain=DSM 17583", "accession": "GCA_010211765.1", "taxid": 283923, "species_taxid": 283923, "relation_to_type": "type", "validated": true, "ani": 77.2012, "matched_fragments": 177, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas haemolytica", "strain": "strain=LMG 19653", "accession": "GCA_006352395.1", "taxid": 141949, "species_taxid": 141949, "relation_to_type": "type", "validated": true, "ani": 77.1971, "matched_fragments": 169, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas haemolytica", "strain": "strain=DSM 13605", "accession": "GCA_004346265.1", "taxid": 141949, "species_taxid": 141949, "relation_to_type": "type", "validated": true, "ani": 77.151, "matched_fragments": 173, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas fontis", "strain": "strain=3729k", "accession": "GCA_008386465.1", "taxid": 2608255, "species_taxid": 2608255, "relation_to_type": "type", "validated": true, "ani": 77.1492, "matched_fragments": 159, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas daejeonensis", "strain": "strain=DSM 17801", "accession": "GCA_010093205.1", "taxid": 266062, "species_taxid": 266062, "relation_to_type": "type", "validated": true, "ani": 77.1249, "matched_fragments": 164, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas sangjuensis", "strain": "strain=DSM 28345", "accession": "GCA_010211755.1", "taxid": 1503750, "species_taxid": 1503750, "relation_to_type": "type", "validated": true, "ani": 77.1126, "matched_fragments": 194, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": "strain=zong2l5", "accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 77.1004, "matched_fragments": 209, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas suwonensis", "strain": "strain=DSM 17175", "accession": "GCA_010093235.1", "taxid": 314722, "species_taxid": 314722, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0953, "matched_fragments": 171, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium gelatinicum", "strain": "strain=R-5-52-3", "accession": "GCA_008033445.1", "taxid": 2598725, "species_taxid": 2598725, "relation_to_type": "type", "validated": true, "ani": 77.0836, "matched_fragments": 181, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 77.059, "matched_fragments": 167, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=DSM 14263", "accession": "GCA_003148905.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 77.0428, "matched_fragments": 172, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 77.025, "matched_fragments": 166, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oleiagrimonas citrea", "strain": "strain=MEBiC09124", "accession": "GCA_012395255.1", "taxid": 1665687, "species_taxid": 1665687, "relation_to_type": "type", "validated": true, "ani": 77.0055, "matched_fragments": 116, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas translucens", "strain": "strain=ATCC 19319", "accession": "GCA_020880735.1", "taxid": 343, "species_taxid": 343, "relation_to_type": "type", "validated": true, "ani": 76.9296, "matched_fragments": 150, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas hyacinthi", "strain": "strain=CFBP1156", "accession": "GCA_002939895.1", "taxid": 56455, "species_taxid": 56455, "relation_to_type": "type", "validated": true, "ani": 76.8829, "matched_fragments": 188, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas hyacinthi", "strain": "strain=CFBP 1156", "accession": "GCA_009769165.1", "taxid": 56455, "species_taxid": 56455, "relation_to_type": "type", "validated": true, "ani": 76.8679, "matched_fragments": 191, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=NCTC10257", "accession": "GCA_900186865.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 76.7304, "matched_fragments": 145, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=ATCC 13637", "accession": "GCA_001997185.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 76.7248, "matched_fragments": 143, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pseudomonas] hibiscicola", "strain": "strain=ATCC 19867", "accession": "GCA_000382065.1", "taxid": 86189, "species_taxid": 86189, "relation_to_type": "type", "validated": true, "ani": 76.7169, "matched_fragments": 143, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=NBRC 14161", "accession": "GCA_001591205.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 76.7025, "matched_fragments": 143, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=MTCC 434", "accession": "GCA_000597745.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 76.639, "matched_fragments": 135, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella amyloliquefaciens", "strain": "strain=DHC06", "accession": "GCA_004296575.1", "taxid": 1770545, "species_taxid": 1770545, "relation_to_type": "type", "validated": true, "ani": 76.3969, "matched_fragments": 116, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 59.03, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014202935.1", "gtdb_species": "s__Rehaibacterium terrae", "ani": 77.7267, "matched_fragments": 214, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Rehaibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006546775.1", "gtdb_species": "s__Lysobacter aestuarii", "ani": 77.4905, "matched_fragments": 154, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017302095.1", "gtdb_species": "s__Thermomonas sp017302095", "ani": 77.2591, "matched_fragments": 116, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Thermomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000513995.1", "gtdb_species": "s__Pseudoxanthomonas sp000513995", "ani": 77.2444, "matched_fragments": 172, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017305095.1", "gtdb_species": "s__Thermomonas sp017305095", "ani": 77.2419, "matched_fragments": 159, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Thermomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008386465.1", "gtdb_species": "s__Arenimonas fontis", "ani": 77.1842, "matched_fragments": 157, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000510725.1", "gtdb_species": "s__Pseudoxanthomonas sp000510725", "ani": 77.1701, "matched_fragments": 178, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.33", "min_intra_species_ani": "99.13", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_010093205.1", "gtdb_species": "s__Pseudoxanthomonas daejeonensis", "ani": 77.1223, "matched_fragments": 165, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008033445.1", "gtdb_species": "s__Vulcaniibacterium_B gelatinicum", "ani": 77.1117, "matched_fragments": 179, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Vulcaniibacterium_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003148905.1", "gtdb_species": "s__Fulvimonas soli", "ani": 77.0734, "matched_fragments": 170, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Fulvimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014202825.1", "gtdb_species": "s__Chiayiivirga flava", "ani": 77.0441, "matched_fragments": 220, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Chiayiivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000953855.2", "gtdb_species": "s__Mizugakiibacter sediminis", "ani": 77.0216, "matched_fragments": 198, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Mizugakiibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014654535.1", "gtdb_species": "s__Pseudomonas_S boreopolis", "ani": 76.9366, "matched_fragments": 164, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudomonas_S", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "98.68", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_006970445.1", "gtdb_species": "s__Stenotrophomonas maltophilia_AU", "ani": 76.8947, "matched_fragments": 143, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013620825.1", "gtdb_species": "s__Rhodanobacter sp001899565", "ani": 76.8364, "matched_fragments": 151, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Rhodanobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.48", "min_intra_species_ani": "98.45", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002138415.1", "gtdb_species": "s__Stenotrophomonas maltophilia_G", "ani": 76.8263, "matched_fragments": 139, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.93", "min_intra_species_ani": "95.59", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_002799245.1", "gtdb_species": "s__Stenotrophomonas maltophilia_S", "ani": 76.7914, "matched_fragments": 143, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000472505.1", "gtdb_species": "s__Luteimonas sp000472505", "ani": 76.7836, "matched_fragments": 167, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004284655.1", "gtdb_species": "s__Pseudoxanthomonas_A spadix_A", "ani": 76.7567, "matched_fragments": 162, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "98.41", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003086775.1", "gtdb_species": "s__Stenotrophomonas sp003086775", "ani": 76.7351, "matched_fragments": 150, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.05", "min_intra_species_ani": "97.07", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.87", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000427505.1", "gtdb_species": "s__Rhodanobacter sp000427505", "ani": 76.5721, "matched_fragments": 155, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Rhodanobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001431625.1", "gtdb_species": "s__Stenotrophomonas geniculata", "ani": 76.5697, "matched_fragments": 140, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.51", "min_intra_species_ani": "96.26", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.77", "num_clustered_genomes": 45, "status": "-" }, { "accession": "GCF_004296575.1", "gtdb_species": "s__Dyella sp004296575", "ani": 76.3969, "matched_fragments": 116, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.355, "cell_length": 0.227, "doubling_h": 0.355, "growth_tmp": 29.562, "optimum_tmp": 29.59, "optimum_ph": 7.131, "genome_size": 4164088.144, "gc_content": 65.291, "coding_genes": 3964.768, "rRNA16S_genes": 2.188, "tRNA_genes": 55.224, "gram_stain": 0.007, "sporulation": 0.0, "motility": 0.612, "range_salinity": 0.25, "facultative_respiration": 0.044, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.955, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.98, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.009, "vibrio_cell_shape": 0.009, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Xanthomonadales", "f__Xanthomonadaceae", "g__JACKOX01", "s__JACKOX01 sp020442545" ], "_genome_taxon": [ "Xanthomonadales", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Xanthomonadales", "f__Xanthomonadaceae", "g__JACKOX01", "s__JACKOX01 sp020442545", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Xanthomonadales", "Xanthomonadaceae", "JACKOX01", "JACKOX01", "sp020442545" ], "_meo": [ { "id": "MEO_0000014", "label": "activated sludge" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }