{
    "type": "genome",
    "identifier": "GCA_020442985.1",
    "organism": "Pseudomonadales bacterium",
    "title": "Pseudomonadales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020442985.1",
        "bioproject": "PRJNA432264",
        "biosample": "SAMN14564309",
        "wgs_master": "JAGRIY000000000.1",
        "refseq_category": "na",
        "taxid": "1891229",
        "species_taxid": "1891229",
        "organism_name": "Pseudomonadales bacterium",
        "infraspecific_name": "",
        "isolate": "HKST-UBA233",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/12",
        "asm_name": "ASM2044298v1",
        "submitter": "The University Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/442/985/GCA_020442985.1_ASM2044298v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-12",
    "dateModified": "2021-10-12",
    "datePublished": "2021-10-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadales bacterium"
        ],
        "sample_taxid": [
            "1891229"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hong Kong SAR, Shatin waste water treatment plant"
        ],
        "sample_host_location_id": [],
        "data_size": "0.785 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 62.59,
        "contamination": 6.25,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2796299",
        "Number of Sequences": "541",
        "Longest Sequences (bp)": "52283",
        "N50 (bp)": "9006",
        "Gap Ratio (%)": "0.001252",
        "GCcontent (%)": "64.9",
        "Number of CDSs": "2083",
        "Average Protein Length": "327.5",
        "Coding Ratio (%)": "73.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "23",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudomonas delhiensis",
                "strain": "strain=CCM 7361",
                "accession": "GCA_900099945.1",
                "taxid": 366289,
                "species_taxid": 366289,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5724,
                "matched_fragments": 59,
                "total_fragments": 686,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas delhiensis",
                "strain": "strain=RLD-1",
                "accession": "GCA_900187975.1",
                "taxid": 366289,
                "species_taxid": 366289,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5526,
                "matched_fragments": 60,
                "total_fragments": 686,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas kuykendallii",
                "strain": "strain=NRRL B-59562",
                "accession": "GCA_900106975.1",
                "taxid": 1007099,
                "species_taxid": 1007099,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3509,
                "matched_fragments": 53,
                "total_fragments": 686,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azotobacter beijerinckii",
                "strain": "strain=DSM 378",
                "accession": "GCA_900110885.1",
                "taxid": 170623,
                "species_taxid": 170623,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2968,
                "matched_fragments": 50,
                "total_fragments": 686,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 62.59,
            "contamination": 6.25,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016718385.1",
                "gtdb_species": "s__UBA5518 sp016718385",
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                "matched_fragments": 292,
                "total_fragments": 686,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__UBA5518;g__UBA5518",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "98.50",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_018057015.1",
                "gtdb_species": "s__UBA5518 sp018057015",
                "ani": 78.5827,
                "matched_fragments": 214,
                "total_fragments": 686,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__UBA5518;g__UBA5518",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016705365.1",
                "gtdb_species": "s__UBA5518 sp002396625",
                "ani": 77.3326,
                "matched_fragments": 163,
                "total_fragments": 686,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__UBA5518;g__UBA5518",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.76",
                "min_intra_species_ani": "99.45",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCA_903938575.1",
                "gtdb_species": "s__UBA5518 sp903938575",
                "ani": 76.6095,
                "matched_fragments": 91,
                "total_fragments": 686,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__UBA5518;g__UBA5518",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.92",
                "min_intra_species_ani": "98.84",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_903928015.1",
                "gtdb_species": "s__UBA5518 sp903928015",
                "ani": 76.2367,
                "matched_fragments": 95,
                "total_fragments": 686,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__UBA5518;g__UBA5518",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.63",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_903921135.1",
                "gtdb_species": "s__UBA5518 sp903921135",
                "ani": 76.1216,
                "matched_fragments": 109,
                "total_fragments": 686,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__UBA5518;g__UBA5518",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.78",
                "min_intra_species_ani": "97.78",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009799925.1",
                "gtdb_species": "s__Pseudomonas_E sp009799925",
                "ani": 75.4703,
                "matched_fragments": 50,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000017205.1",
                "gtdb_species": "s__Pseudomonas aeruginosa_A",
                "ani": 75.3606,
                "matched_fragments": 60,
                "total_fragments": 686,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.07",
                "min_intra_species_ani": "98.78",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 42,
                "status": "-"
            },
            {
                "accession": "GCF_900106975.1",
                "gtdb_species": "s__Pseudomonas_O kuykendallii",
                "ani": 75.3509,
                "matched_fragments": 53,
                "total_fragments": 686,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_O",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.83",
                "min_intra_species_ani": "96.68",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.159,
        "cell_length": 0.181,
        "doubling_h": 0.003,
        "growth_tmp": 28.99,
        "optimum_tmp": 28.439,
        "optimum_ph": 7.223,
        "genome_size": 4973266.217,
        "gc_content": 54.575,
        "coding_genes": 4450.277,
        "rRNA16S_genes": 5.452,
        "tRNA_genes": 67.069,
        "gram_stain": 0.0,
        "sporulation": 0.007,
        "motility": 0.593,
        "range_salinity": 0.666,
        "facultative_respiration": 0.024,
        "anaerobic_respiration": 0.004,
        "aerobic_respiration": 0.971,
        "mesophilic_range_tmp": 0.92,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.079,
        "bacillus_cell_shape": 0.791,
        "coccus_cell_shape": 0.097,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.111,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__UBA5518",
        "g__UBA5518",
        "s__UBA5518 sp024234165"
    ],
    "_genome_taxon": [
        "Pseudomonadales",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__UBA5518",
        "g__UBA5518",
        "s__UBA5518 sp024234165",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Pseudomonadales",
        "UBA5518",
        "UBA5518",
        "UBA5518",
        "sp024234165"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}