{ "type": "genome", "identifier": "GCA_020443105.1", "organism": "Pseudomonadales bacterium", "title": "Pseudomonadales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020443105.1", "bioproject": "PRJNA432264", "biosample": "SAMN14564306", "wgs_master": "JAGRIV000000000.1", "refseq_category": "na", "taxid": "1891229", "species_taxid": "1891229", "organism_name": "Pseudomonadales bacterium", "infraspecific_name": "", "isolate": "HKST-UBA230", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/12", "asm_name": "ASM2044310v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/443/105/GCA_020443105.1_ASM2044310v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-12", "dateModified": "2021-10-12", "datePublished": "2021-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadales bacterium" ], "sample_taxid": [ "1891229" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "0.803 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 67.36, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2815743", "Number of Sequences": "156", "Longest Sequences (bp)": "180111", "N50 (bp)": "46981", "Gap Ratio (%)": "0.019071", "GCcontent (%)": "60.0", "Number of CDSs": "2402", "Average Protein Length": "336.7", "Coding Ratio (%)": "86.2", "Number of rRNAs": "0", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halopseudomonas aestusnigri", "strain": "strain=CECT 8317", "accession": "GCA_900108005.1", "taxid": 857252, "species_taxid": 857252, "relation_to_type": "type", "validated": true, "ani": 76.5969, "matched_fragments": 62, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 76.5166, "matched_fragments": 67, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas aestusnigri", "strain": "strain=VGXO14", "accession": "GCA_002197985.1", "taxid": 857252, "species_taxid": 857252, "relation_to_type": "type", "validated": true, "ani": 76.5026, "matched_fragments": 62, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudohongiella spirulinae", "strain": "strain=KCTC 32221", "accession": "GCA_001444425.1", "taxid": 1249552, "species_taxid": 1249552, "relation_to_type": "type", "validated": true, "ani": 76.4484, "matched_fragments": 84, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flexibilis", "strain": "strain=ATCC 29606", "accession": "GCA_900155995.1", "taxid": 706570, "species_taxid": 706570, "relation_to_type": "type", "validated": true, "ani": 76.4113, "matched_fragments": 91, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flexibilis", "strain": "strain=ATCC 29606", "accession": "GCA_000802425.1", "taxid": 706570, "species_taxid": 706570, "relation_to_type": "type", "validated": true, "ani": 76.3697, "matched_fragments": 93, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 76.3474, "matched_fragments": 99, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudohongiella acticola", "strain": "strain=KCTC 42131", "accession": "GCA_001758195.1", "taxid": 1524254, "species_taxid": 1524254, "relation_to_type": "type", "validated": true, "ani": 76.3374, "matched_fragments": 88, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer flavimaris", "strain": "strain=WRN-8", "accession": "GCA_001641755.2", "taxid": 1781068, "species_taxid": 1781068, "relation_to_type": "type", "validated": true, "ani": 76.2331, "matched_fragments": 58, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parahaliea mediterranea", "strain": "strain=DSM 21924", "accession": "GCA_003402235.1", "taxid": 651086, "species_taxid": 651086, "relation_to_type": "type", "validated": true, "ani": 76.1726, "matched_fragments": 97, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pseudomonas] nosocomialis", "strain": "strain=A31/70", "accession": "GCA_005876855.1", "taxid": 1056496, "species_taxid": 1056496, "relation_to_type": "type", "validated": true, "ani": 76.1509, "matched_fragments": 79, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineobactrum salinum", "strain": "strain=M2", "accession": "GCA_010669285.1", "taxid": 2708301, "species_taxid": 2708301, "relation_to_type": "type", "validated": true, "ani": 76.1383, "matched_fragments": 62, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ekonensis", "strain": "strain=COR58", "accession": "GCA_019145435.1", "taxid": 2842353, "species_taxid": 2842353, "relation_to_type": "type", "validated": true, "ani": 76.1366, "matched_fragments": 81, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudohongiella nitratireducens", "strain": "strain=SCS-49", "accession": "GCA_001642735.1", "taxid": 1768907, "species_taxid": 1768907, "relation_to_type": "type", "validated": true, "ani": 76.1353, "matched_fragments": 65, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudohongiella nitratireducens", "strain": "strain=CGMCC 1.15425", "accession": "GCA_014642795.1", "taxid": 1768907, "species_taxid": 1768907, "relation_to_type": "type", "validated": true, "ani": 76.1353, "matched_fragments": 65, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 76.1177, "matched_fragments": 75, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas japonica", "strain": "strain=NBRC 103040", "accession": "GCA_000730585.1", "taxid": 256466, "species_taxid": 256466, "relation_to_type": "type", "validated": true, "ani": 76.0973, "matched_fragments": 90, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas japonica", "strain": "strain=DSM 22348", "accession": "GCA_900188455.1", "taxid": 256466, "species_taxid": 256466, "relation_to_type": "type", "validated": true, "ani": 76.0973, "matched_fragments": 90, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ullengensis", "strain": "strain=UL070", "accession": "GCA_014174475.1", "taxid": 2759166, "species_taxid": 2759166, "relation_to_type": "type", "validated": true, "ani": 76.0678, "matched_fragments": 91, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parahaliea aestuarii", "strain": "strain=S2-26", "accession": "GCA_008064635.1", "taxid": 1852021, "species_taxid": 1852021, "relation_to_type": "type", "validated": true, "ani": 76.0661, "matched_fragments": 91, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas urmiana", "strain": "strain=TBZ3", "accession": "GCA_005780185.1", "taxid": 490901, "species_taxid": 490901, "relation_to_type": "type", "validated": true, "ani": 76.0452, "matched_fragments": 65, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter lutaoensis", "strain": "strain=T5054", "accession": "GCA_001981305.1", "taxid": 135739, "species_taxid": 135739, "relation_to_type": "type", "validated": true, "ani": 76.013, "matched_fragments": 61, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter profundi", "strain": "strain=PWS21", "accession": "GCA_002744715.1", "taxid": 2666256, "species_taxid": 2666256, "relation_to_type": "type", "validated": true, "ani": 75.9756, "matched_fragments": 53, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alkalisoli", "strain": "strain=M5N1S17", "accession": "GCA_021412585.1", "taxid": 2907158, "species_taxid": 2907158, "relation_to_type": "type", "validated": true, "ani": 75.9373, "matched_fragments": 65, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromatocurvus halotolerans", "strain": "strain=DSM 23344", "accession": "GCA_003428685.1", "taxid": 1132028, "species_taxid": 1132028, "relation_to_type": "type", "validated": true, "ani": 75.9141, "matched_fragments": 56, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromatocurvus halotolerans", "strain": "strain=DSM 23344", "accession": "GCA_004340525.1", "taxid": 1132028, "species_taxid": 1132028, "relation_to_type": "type", "validated": true, "ani": 75.9141, "matched_fragments": 56, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=DSM 50238", "accession": "GCA_024448505.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "type", "validated": true, "ani": 75.9113, "matched_fragments": 99, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=DSM 50238", "accession": "GCA_002891015.1", "taxid": 2968968, 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903889815.1", "gtdb_species": "s__UBA5078 sp903889815", "ani": 77.9264, "matched_fragments": 218, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__UBA5078", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002416505.1", "gtdb_species": "s__UBA5078 sp002416505", "ani": 77.7568, "matched_fragments": 305, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__UBA5078", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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"-" }, { "accession": "GCA_002711845.1", "gtdb_species": "s__Pseudohongiella sp002711845", "ani": 76.7649, "matched_fragments": 131, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__Pseudohongiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003556835.1", "gtdb_species": "s__PWQG01 sp003556835", "ani": 76.6909, "matched_fragments": 93, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__PWQG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017255185.1", "gtdb_species": "s__Parahaliea mediterranea_A", "ani": 76.6177, "matched_fragments": 90, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011050365.1", "gtdb_species": "s__Pseudohongiella sp011050365", "ani": 76.6119, "matched_fragments": 116, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__Pseudohongiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002197985.1", "gtdb_species": "s__Pseudomonas_D aestusnigri", "ani": 76.5339, "matched_fragments": 61, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.11", "min_intra_species_ani": "96.74", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.81", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCF_003056305.1", "gtdb_species": "s__Halomonas denitrificans", "ani": 76.5166, "matched_fragments": 67, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002706685.1", "gtdb_species": 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