{
    "type": "genome",
    "identifier": "GCA_020443355.1",
    "organism": "Halioglobus sp.",
    "title": "Halioglobus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "The University Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020443355.1",
        "bioproject": "PRJNA432264",
        "biosample": "SAMN14564293",
        "wgs_master": "JAGRII000000000.1",
        "refseq_category": "na",
        "taxid": "2024834",
        "species_taxid": "2024834",
        "organism_name": "Halioglobus sp.",
        "infraspecific_name": "",
        "isolate": "HKST-UBA219",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/12",
        "asm_name": "ASM2044335v1",
        "submitter": "The University Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/443/355/GCA_020443355.1_ASM2044335v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-12",
    "dateModified": "2021-10-12",
    "datePublished": "2021-10-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halioglobus sp."
        ],
        "sample_taxid": [
            "2024834"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hong Kong SAR, Shatin waste water treatment plant"
        ],
        "sample_host_location_id": [],
        "data_size": "0.669 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 57.02,
        "contamination": 1.14,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2345694",
        "Number of Sequences": "509",
        "Longest Sequences (bp)": "24683",
        "N50 (bp)": "6130",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.3",
        "Number of CDSs": "1706",
        "Average Protein Length": "298.5",
        "Coding Ratio (%)": "65.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "20",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Seongchinamella sediminis",
                "strain": "strain=U0301",
                "accession": "GCA_003457605.1",
                "taxid": 2283635,
                "species_taxid": 2283635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8251,
                "matched_fragments": 137,
                "total_fragments": 496,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parahaliea aestuarii",
                "strain": "strain=S2-26",
                "accession": "GCA_008064635.1",
                "taxid": 1852021,
                "species_taxid": 1852021,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7906,
                "matched_fragments": 126,
                "total_fragments": 496,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parahaliea mediterranea",
                "strain": "strain=DSM 21924",
                "accession": "GCA_003402235.1",
                "taxid": 651086,
                "species_taxid": 651086,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4593,
                "matched_fragments": 142,
                "total_fragments": 496,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parahaliea maris",
                "strain": "strain=HSLHS9",
                "accession": "GCA_008064665.1",
                "taxid": 2716870,
                "species_taxid": 2716870,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3105,
                "matched_fragments": 107,
                "total_fragments": 496,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kineobactrum salinum",
                "strain": "strain=M2",
                "accession": "GCA_010669285.1",
                "taxid": 2708301,
                "species_taxid": 2708301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0497,
                "matched_fragments": 104,
                "total_fragments": 496,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Seongchinamella unica",
                "strain": "strain=GH4-78",
                "accession": "GCA_004354085.1",
                "taxid": 2547392,
                "species_taxid": 2547392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9146,
                "matched_fragments": 102,
                "total_fragments": 496,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haliea salexigens",
                "strain": "strain=DSM 19537",
                "accession": "GCA_000423125.1",
                "taxid": 287487,
                "species_taxid": 287487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8279,
                "matched_fragments": 84,
                "total_fragments": 496,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudohalioglobus lutimaris",
                "strain": "strain=HF004",
                "accession": "GCA_002866825.1",
                "taxid": 1737061,
                "species_taxid": 1737061,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2645,
                "matched_fragments": 57,
                "total_fragments": 496,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=DSM 50071",
                "accession": "GCA_024169805.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2922,
                "matched_fragments": 55,
                "total_fragments": 496,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=JCM 5962",
                "accession": "GCA_022496575.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2364,
                "matched_fragments": 56,
                "total_fragments": 496,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 57.02,
            "contamination": 1.14,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_017255185.1",
                "gtdb_species": "s__Parahaliea mediterranea_A",
                "ani": 78.3326,
                "matched_fragments": 154,
                "total_fragments": 496,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004745945.1",
                "gtdb_species": "s__Halioglobus sp004745945",
                "ani": 78.0195,
                "matched_fragments": 141,
                "total_fragments": 496,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002699145.1",
                "gtdb_species": "s__Halioglobus sp002699145",
                "ani": 77.8965,
                "matched_fragments": 148,
                "total_fragments": 496,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003457605.1",
                "gtdb_species": "s__Halioglobus sediminis",
                "ani": 77.828,
                "matched_fragments": 137,
                "total_fragments": 496,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008064635.1",
                "gtdb_species": "s__Parahaliea aestuarii",
                "ani": 77.7646,
                "matched_fragments": 127,
                "total_fragments": 496,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002692965.1",
                "gtdb_species": "s__NZNC01 sp002692965",
                "ani": 77.5334,
                "matched_fragments": 105,
                "total_fragments": 496,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__NZNC01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.60",
                "min_intra_species_ani": "97.22",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003402235.1",
                "gtdb_species": "s__Parahaliea mediterranea",
                "ani": 77.4402,
                "matched_fragments": 143,
                "total_fragments": 496,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009937575.1",
                "gtdb_species": "s__Halioglobus sp009937575",
                "ani": 77.3867,
                "matched_fragments": 114,
                "total_fragments": 496,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008064665.1",
                "gtdb_species": "s__Parahaliea maris",
                "ani": 77.3104,
                "matched_fragments": 107,
                "total_fragments": 496,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004354085.1",
                "gtdb_species": "s__Halioglobus sp004354085",
                "ani": 76.9396,
                "matched_fragments": 100,
                "total_fragments": 496,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000423125.1",
                "gtdb_species": "s__Haliea salexigens",
                "ani": 76.8032,
                "matched_fragments": 85,
                "total_fragments": 496,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Haliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.91",
                "min_intra_species_ani": "96.59",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_902705825.1",
                "gtdb_species": "s__Halioglobus japonicus_A",
                "ani": 76.4444,
                "matched_fragments": 54,
                "total_fragments": 496,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": -0.398,
        "doubling_h": null,
        "growth_tmp": 25.0,
        "optimum_tmp": 22.5,
        "optimum_ph": 7.5,
        "genome_size": 4559965.5,
        "gc_content": 57.533,
        "coding_genes": 3929.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 42.0,
        "gram_stain": null,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Halieaceae",
        "g__Halioglobus",
        "s__"
    ],
    "_genome_taxon": [
        "Halioglobus",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Halieaceae",
        "g__Halioglobus",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Pseudomonadales",
        "Halieaceae",
        "Halioglobus",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}