{ "type": "genome", "identifier": "GCA_020445185.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020445185.1", "bioproject": "PRJNA432264", "biosample": "SAMN14564262", "wgs_master": "JAGRHD000000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "HKST-UBA190", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/13", "asm_name": "ASM2044518v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/445/185/GCA_020445185.1_ASM2044518v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-13", "dateModified": "2021-10-13", "datePublished": "2021-10-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "1.022 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.82, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3592617", "Number of Sequences": "505", "Longest Sequences (bp)": "99087", "N50 (bp)": "18153", "Gap Ratio (%)": "0.136836", "GCcontent (%)": "62.5", "Number of CDSs": "3089", "Average Protein Length": "303.9", "Coding Ratio (%)": "78.4", "Number of rRNAs": "2", "Number of tRNAs": "30", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_004343155.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 77.288, "matched_fragments": 161, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalocapsa marina", "strain": "strain=DSM 19078", "accession": "GCA_008632335.1", "taxid": 424902, "species_taxid": 424902, "relation_to_type": "type", "validated": true, "ani": 77.2329, "matched_fragments": 147, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_016583515.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 77.2129, "matched_fragments": 159, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium tepidum", "strain": "strain=NZ", "accession": "GCA_018409545.1", "taxid": 553982, "species_taxid": 553982, "relation_to_type": "type", "validated": true, "ani": 77.1878, "matched_fragments": 128, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium humboldtianum", "strain": "strain=DSM 21881", "accession": "GCA_013385175.1", "taxid": 504901, "species_taxid": 504901, "relation_to_type": "type", "validated": true, "ani": 77.082, "matched_fragments": 129, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium purpuratum", "strain": "strain=984", "accession": "GCA_000224005.3", "taxid": 37487, "species_taxid": 37487, "relation_to_type": "type", "validated": true, "ani": 77.0669, "matched_fragments": 167, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioflavicoccus mobilis", "strain": "strain=8321", "accession": "GCA_000327045.1", "taxid": 80679, "species_taxid": 80679, "relation_to_type": "type", "validated": true, "ani": 76.9518, "matched_fragments": 121, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 76.9477, "matched_fragments": 120, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halochromatium salexigens", "strain": "strain=DSM 4395", "accession": "GCA_016653295.1", "taxid": 49447, "species_taxid": 49447, "relation_to_type": "type", "validated": true, "ani": 76.8898, "matched_fragments": 123, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 76.684, "matched_fragments": 141, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuricaulis limicola", "strain": "strain=HA5", "accession": "GCA_002355735.1", "taxid": 1620215, "species_taxid": 1620215, "relation_to_type": "type", "validated": true, "ani": 76.6529, "matched_fragments": 75, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halochromatium glycolicum", "strain": "strain=DSM 11080", "accession": "GCA_016584085.1", "taxid": 85075, "species_taxid": 85075, "relation_to_type": "type", "validated": true, "ani": 76.5909, "matched_fragments": 138, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas borbori", "strain": "strain=DSM 17834", "accession": "GCA_900115555.1", "taxid": 289003, "species_taxid": 289003, "relation_to_type": "type", "validated": true, "ani": 76.5216, "matched_fragments": 81, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylonatrum kenyense", "strain": "strain=AMT 1", "accession": "GCA_023195885.1", "taxid": 455253, "species_taxid": 455253, "relation_to_type": "type", "validated": true, "ani": 76.514, "matched_fragments": 62, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 76.5069, "matched_fragments": 102, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium arenosum", "strain": "strain=CAU 1594", "accession": "GCA_019795155.1", "taxid": 2862496, "species_taxid": 2862496, "relation_to_type": "type", "validated": true, "ani": 76.4001, "matched_fragments": 79, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio denitrificans", "strain": "strain=ALJD", "accession": "GCA_002000365.1", "taxid": 108003, "species_taxid": 108003, "relation_to_type": "type", "validated": true, "ani": 76.3839, "matched_fragments": 87, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiolapillus brandeum", "strain": "strain=Hiromi 1", "accession": "GCA_000828615.1", "taxid": 1076588, "species_taxid": 1076588, "relation_to_type": "type", "validated": true, "ani": 76.3591, "matched_fragments": 64, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio nitratireducens", "strain": "strain=DSM 14787", "accession": "GCA_000321415.2", "taxid": 186931, "species_taxid": 186931, "relation_to_type": "type", "validated": true, "ani": 76.3465, "matched_fragments": 106, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio versutus", "strain": "strain=AL 2", "accession": "GCA_001999325.1", "taxid": 106634, "species_taxid": 106634, "relation_to_type": "type", "validated": true, "ani": 76.32, "matched_fragments": 78, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=DSM 50238", "accession": "GCA_002891015.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "type", "validated": true, "ani": 76.3131, "matched_fragments": 95, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter fulvus", "strain": "strain=Jip2", "accession": "GCA_000264315.1", "taxid": 219571, "species_taxid": 219571, "relation_to_type": "type", "validated": true, "ani": 76.2948, "matched_fragments": 65, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=FDAARGOS_876", "accession": "GCA_016028635.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "suspected-type", "validated": true, "ani": 76.2286, "matched_fragments": 94, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=DSM 50238", "accession": "GCA_024448505.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "type", "validated": true, "ani": 76.1729, "matched_fragments": 92, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax gelatinosus", "strain": "strain=DSM 1709", "accession": "GCA_016583525.1", "taxid": 28068, "species_taxid": 28068, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1554, "matched_fragments": 111, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 76.1131, "matched_fragments": 67, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax gelatinosus", "strain": "strain=DSM 1709", "accession": "GCA_004340905.1", "taxid": 28068, "species_taxid": 28068, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1108, "matched_fragments": 114, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, 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"accession": "GCA_018399035.1", "gtdb_species": "s__Thiocapsa sp018399035", "ani": 76.5706, "matched_fragments": 109, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiocapsa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.89", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001995255.1", "gtdb_species": "s__Thioalkalivibrio halophilus", "ani": 76.5461, "matched_fragments": 89, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Thioalkalivibrionaceae;g__Thioalkalivibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.06", "min_intra_species_ani": "95.07", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.81", "num_clustered_genomes": 11, "status": "-" }, { "accession": 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