{ "type": "genome", "identifier": "GCA_020445645.1", "organism": "Geminicoccaceae bacterium", "title": "Geminicoccaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020445645.1", "bioproject": "PRJNA432264", "biosample": "SAMN14564239", "wgs_master": "JAGRGG000000000.1", "refseq_category": "na", "taxid": "2448052", "species_taxid": "2448052", "organism_name": "Geminicoccaceae bacterium", "infraspecific_name": "", "isolate": "HKST-UBA17", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/13", "asm_name": "ASM2044564v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/445/645/GCA_020445645.1_ASM2044564v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-13", "dateModified": "2021-10-13", "datePublished": "2021-10-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Geminicoccaceae bacterium" ], "sample_taxid": [ "2448052" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "1.019 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3782423", "Number of Sequences": "291", "Longest Sequences (bp)": "85125", "N50 (bp)": "21550", "Gap Ratio (%)": "0.083967", "GCcontent (%)": "70.7", "Number of CDSs": "3466", "Average Protein Length": "308.0", "Coding Ratio (%)": "84.7", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Geminicoccus roseus", "strain": "strain=DSM 18922", "accession": "GCA_000427665.1", "taxid": 404900, "species_taxid": 404900, "relation_to_type": "type", "validated": true, "ani": 76.645, "matched_fragments": 281, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.5503, "matched_fragments": 349, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=USBA 355", "accession": "GCA_900177295.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.5273, "matched_fragments": 349, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=SM30", "accession": "GCA_011317485.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 76.1921, "matched_fragments": 274, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum baldaniorum", "strain": "strain=Sp245", "accession": "GCA_003119195.2", "taxid": 1064539, "species_taxid": 1064539, "relation_to_type": "type", "validated": true, "ani": 76.0062, "matched_fragments": 262, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum baldaniorum", "strain": "strain=Sp245", "accession": "GCA_000237365.1", "taxid": 1064539, "species_taxid": 1064539, "relation_to_type": "type", "validated": true, "ani": 75.9793, "matched_fragments": 263, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inquilinus limosus", "strain": "strain=DSM 16000", "accession": "GCA_000423185.1", "taxid": 171674, "species_taxid": 171674, "relation_to_type": "type", "validated": true, "ani": 75.9376, "matched_fragments": 325, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum soli", "strain": "strain=CC-LY788", "accession": "GCA_017876165.1", "taxid": 1304799, "species_taxid": 1304799, "relation_to_type": "type", "validated": true, "ani": 75.9172, "matched_fragments": 234, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=DSM 102969", "accession": "GCA_004362745.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 75.9017, "matched_fragments": 339, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pleomorphomonas koreensis", "strain": "strain=DSM 23070", "accession": "GCA_000425185.1", "taxid": 257440, "species_taxid": 257440, "relation_to_type": "type", "validated": true, "ani": 75.8453, "matched_fragments": 216, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium aerolatum", "strain": "strain=DSM 19013", "accession": "GCA_022179085.1", "taxid": 418708, "species_taxid": 418708, "relation_to_type": "type", "validated": true, "ani": 75.8245, "matched_fragments": 212, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes piscinae", "strain": "strain=DSM 19946", "accession": "GCA_003258855.1", "taxid": 444923, "species_taxid": 444923, "relation_to_type": "type", "validated": true, "ani": 75.8089, "matched_fragments": 196, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 75.7882, "matched_fragments": 319, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum marinum", "strain": "strain=2CG4", "accession": "GCA_009697225.1", "taxid": 2662447, "species_taxid": 2662447, "relation_to_type": "type", "validated": true, "ani": 75.7758, "matched_fragments": 203, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 75.7711, "matched_fragments": 341, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pleomorphomonas carboxyditropha", "strain": "strain=SVCO-16", "accession": "GCA_002770725.1", "taxid": 2023338, "species_taxid": 2023338, "relation_to_type": "type", "validated": true, "ani": 75.7516, "matched_fragments": 204, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 75.7207, "matched_fragments": 344, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibaculum pallidiluteum", "strain": "strain=SYSU D00532", "accession": "GCA_017355985.1", "taxid": 2812559, "species_taxid": 2812559, "relation_to_type": "type", "validated": true, "ani": 75.7156, "matched_fragments": 241, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 75.7108, "matched_fragments": 324, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amaricoccus solimangrovi", "strain": "strain=HB172011", "accession": "GCA_006385685.1", "taxid": 2589815, "species_taxid": 2589815, "relation_to_type": "type", "validated": true, "ani": 75.6988, "matched_fragments": 243, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hypericibacter adhaerens", "strain": "strain=R5959", "accession": "GCA_008728835.1", "taxid": 2602016, "species_taxid": 2602016, "relation_to_type": "type", "validated": true, "ani": 75.6692, "matched_fragments": 210, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium hispanicum", "strain": "strain=DSM 16372", "accession": "GCA_022179285.1", "taxid": 270350, "species_taxid": 270350, "relation_to_type": "type", "validated": true, "ani": 75.6297, "matched_fragments": 270, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidongia dinghuensis", "strain": "strain=CGMCC 1.15725", "accession": "GCA_014643535.1", "taxid": 1867774, "species_taxid": 1867774, "relation_to_type": "type", "validated": true, "ani": 75.6105, "matched_fragments": 221, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 75.6005, "matched_fragments": 212, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium kunmingense", "strain": "strain=CGMCC 1.12274", "accession": "GCA_002813245.1", "taxid": 1211806, "species_taxid": 1211806, "relation_to_type": "type", "validated": true, "ani": 75.3128, "matched_fragments": 72, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidibrevibacterium fodinaquatile", "strain": "strain=G45-3", "accession": "GCA_003352165.1", "taxid": 1969806, "species_taxid": 1969806, "relation_to_type": "type", "validated": true, "ani": 75.0639, "matched_fragments": 108, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.92, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_007131045.1", "gtdb_species": "s__SLRI01 sp007131045", "ani": 77.3349, "matched_fragments": 269, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Geminicoccales;f__Geminicoccaceae;g__SLRI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011390475.1", "gtdb_species": "s__SLRI01 sp011390475", "ani": 77.1241, "matched_fragments": 278, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Geminicoccales;f__Geminicoccaceae;g__SLRI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000427665.1", "gtdb_species": "s__Geminicoccus roseus", "ani": 76.645, "matched_fragments": 281, "total_fragments": 1111, "gtdb_taxonomy": 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